haddocking / fccLinks
Fraction of Common Contacts Clustering Algorithm for Protein Structures
☆26Updated 3 years ago
Alternatives and similar repositories for fcc
Users that are interested in fcc are comparing it to the libraries listed below
Sorting:
- PyDock Tutorial☆32Updated 7 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated last month
- Scores for Hydrophobicity and Charges based on SASAs☆34Updated last month
- Making Protein folding accessible to all!☆22Updated last year
- Analysis of contacts in molecular dynamics trajectories☆43Updated 5 years ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- Set of useful HADDOCK utility scripts☆53Updated 11 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆22Updated last year
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆34Updated 3 weeks ago
- Some Rosetta Scripts that allow for various simple tasks☆14Updated 5 years ago
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆19Updated 3 years ago
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆15Updated last year
- Repo contains source code of the SurfaceID paper☆23Updated last year
- Automated construction of protein chimeras and their analysis.☆15Updated last year
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆27Updated 6 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆48Updated last year
- De novo design of small molecule binding sites into proteins☆12Updated 4 years ago
- ☆48Updated 8 months ago
- PyPEF – Pythonic Protein Engineering Framework☆24Updated 2 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 2 months ago
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Updated 3 years ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆23Updated 2 months ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆71Updated 4 months ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆31Updated last year
- Modelling of Large Protein Complexes☆37Updated last week
- ☆15Updated 5 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago