haddocking / fccLinks
Fraction of Common Contacts Clustering Algorithm for Protein Structures
☆27Updated 4 years ago
Alternatives and similar repositories for fcc
Users that are interested in fcc are comparing it to the libraries listed below
Sorting:
- Scores for Hydrophobicity and Charges based on SASAs☆40Updated 5 months ago
- An open-source library for the analysis of protein interactions.☆33Updated 4 years ago
- PyDock Tutorial☆35Updated 7 years ago
- Some Rosetta Scripts that allow for various simple tasks☆14Updated 5 years ago
- De novo design of small molecule binding sites into proteins☆12Updated 4 years ago
- Analysis of contacts in molecular dynamics trajectories☆44Updated 6 years ago
- Making Protein folding accessible to all!☆24Updated last year
- Set of useful HADDOCK utility scripts☆56Updated 2 months ago
- ☆41Updated last year
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆15Updated last year
- Binding pocket optimization based on force fields and docking scoring functions☆37Updated 8 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 5 months ago
- Explicit crosslinks in AlphaFold 3☆23Updated 8 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 6 months ago
- Modelling of Large Protein Complexes☆38Updated 4 months ago
- ☆13Updated 8 years ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆36Updated last week
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆30Updated 2 months ago
- Automated construction of protein chimeras and their analysis.☆15Updated 2 years ago
- ☆25Updated 4 months ago
- ☆26Updated 3 months ago
- PyPEF – Pythonic Protein Engineering Framework☆24Updated 2 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆36Updated 3 years ago
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆19Updated 4 years ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆24Updated 6 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆41Updated last year
- pyKVFinder: Python-C parallel KVFinder☆29Updated last week
- Code for ApoDock☆21Updated 8 months ago