haddocking / fcc
Fraction of Common Contacts Clustering Algorithm for Protein Structures
☆26Updated 3 years ago
Alternatives and similar repositories for fcc:
Users that are interested in fcc are comparing it to the libraries listed below
- Making Protein folding accessible to all!☆22Updated last year
- PyDock Tutorial☆30Updated 6 years ago
- Automated construction of protein chimeras and their analysis.☆14Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆28Updated 10 months ago
- Repo contains source code of the SurfaceID paper☆22Updated last year
- Set of useful HADDOCK utility scripts☆51Updated 7 months ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- Explicit crosslinks in AlphaFold 3☆21Updated 3 weeks ago
- De novo design of small molecule binding sites into proteins☆13Updated 4 years ago
- Some Rosetta Scripts that allow for various simple tasks☆13Updated 5 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆35Updated 2 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- Scores for Hydrophobicity and Charges based on SASAs☆31Updated 3 weeks ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 10 months ago
- Efficient manipulation of protein structures in Python☆53Updated 5 months ago
- ☆22Updated last week
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆23Updated 5 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆41Updated 2 years ago
- ☆33Updated last year
- Material to run the HADDOCK antibody-antigen modelling protocol☆22Updated last year
- PyPEF – Pythonic Protein Engineering Framework☆24Updated 4 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 2 years ago
- Analysis of alphafold and colabfold results☆25Updated this week
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆56Updated 2 months ago
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆14Updated 11 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆31Updated 3 weeks ago
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆17Updated 3 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆25Updated 9 months ago
- ☆49Updated 2 weeks ago