LPDI-EPFL / RosettaSurf

Related projects ⓘ

Alternatives and complementary repositories for RosettaSurf

• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 3 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆33Updated 2 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 8 months ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆30Updated 5 months ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆18Updated 5 years ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆13Updated 3 years ago
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• issararab / PEvoLM
  Protein Sequence Evolutionary Information Language Model
  ☆12Updated last year
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆25Updated last week
• bwicky / oligomer_hallucination
  ☆35Updated 11 months ago
• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆25Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆20Updated last month
• Kortemme-Lab / match_ligand_binding_sites
  Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.
  ☆11Updated 3 years ago
• huhlim / alphafold-multistate
  ☆31Updated 7 months ago
• atommoyer / stapler
  A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins
  ☆17Updated 9 months ago
• tommyhuangthu / FASPR
  an ultra-fast and accurate program for deterministic protein sidechain packing
  ☆28Updated last year
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆24Updated this week
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆27Updated 7 months ago
• CSB-KaracaLab / prot-on
  This repo contains the collection of codes to find designer interfacial mutations
  ☆16Updated last year
• THGLab / int2cart
  Building more accurate protein structures from backbone torsion angles
  ☆14Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆17Updated 4 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆14Updated 11 months ago
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆11Updated 2 weeks ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆27Updated last week
• vmullig / ndm1_design_scripts
  Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1
  ☆16Updated 3 years ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 3 years ago
• sokrypton / ColabBio
  random colab notebooks for biology
  ☆22Updated 2 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆24Updated 7 months ago