Alternatives and similar repositories for RosettaSurf

Users that are interested in RosettaSurf are comparing it to the libraries listed below

• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• matteoferla / Display-of-preset-Rosetta-NCAAs
  What exactly are the non-canonical amino acids in the Rosetta database folder?
  ☆12Updated 5 years ago
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 2 months ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆48Updated this week
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 4 months ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 4 years ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated 2 weeks ago
• ajasja / prosculpt
  Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)
  ☆44Updated 2 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆48Updated last month
• issararab / PEvoLM
  Protein Sequence Evolutionary Information Language Model
  ☆13Updated 2 years ago
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆59Updated last month
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• dgattiwsu / MD_without_molecules
  Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks
  ☆11Updated 3 years ago
• ohuelab / ColabDesign-cyclic-binder
  ☆36Updated 2 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated 2 years ago
• KhondamirRustamov / FoldCraft
  ☆42Updated 3 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated last year
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆16Updated 9 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 5 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated last year
• patrickbryant1 / RareFold
  Structure prediction and design of proteins with noncanonical amino acids
  ☆111Updated this week
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• ak422 / DDAffinity
  ☆23Updated 5 months ago
• uagaug / DeNovoHeterodimers
  Scripts and data deposition for de novo heterodimers manuscript
  ☆11Updated 6 years ago