Predict the binding affinity of protein-protein complexes from structural data
☆191Oct 3, 2025Updated 9 months ago
Alternatives and similar repositories for prodigy
Users that are interested in prodigy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EvolveX, a de novo antibody computational design pipeline.☆24Sep 18, 2025Updated 10 months ago
- ☆413Aug 7, 2024Updated last year
- open source repository☆149Nov 30, 2023Updated 2 years ago
- Official repo of the modular BioExcel version of HADDOCK☆256Updated this week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆258Mar 26, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Set of useful HADDOCK utility scripts☆57Sep 19, 2025Updated 10 months ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆402Jul 14, 2026Updated last week
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆421Updated this week
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆189Oct 7, 2025Updated 9 months ago
- A dependency-free cross-platform swiss army knife for PDB files.☆456Jun 10, 2026Updated last month
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆133Feb 26, 2025Updated last year
- Improved antibody structure-based design using inverse folding☆169Dec 9, 2025Updated 7 months ago
- PDBFixer fixes problems in PDB files☆664Mar 10, 2026Updated 4 months ago
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆68Aug 26, 2025Updated 10 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆415Feb 26, 2026Updated 4 months ago
- ☆151Jul 16, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆73Dec 10, 2023Updated 2 years ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆251Jan 3, 2026Updated 6 months ago
- ☆98Oct 14, 2025Updated 9 months ago
- ☆157Aug 17, 2022Updated 3 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆763Jun 19, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆10Jun 13, 2022Updated 4 years ago
- ☆514Mar 5, 2026Updated 4 months ago
- DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…☆27Feb 23, 2026Updated 4 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆75Jul 2, 2025Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆113Apr 15, 2026Updated 3 months ago
- ☆92Nov 25, 2025Updated 7 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆54Jun 22, 2026Updated 3 weeks ago
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 3 years ago
- Kuhlman Lab Installation of AlphaFold3☆42Mar 26, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆100Jun 11, 2025Updated last year
- Structure prediction and design of proteins with noncanonical amino acids☆139Feb 1, 2026Updated 5 months ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆163Oct 11, 2023Updated 2 years ago
- Prediction of Protein-Small molecule binding affinities☆22Oct 1, 2025Updated 9 months ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆50Mar 21, 2024Updated 2 years ago
- C-library for calculating Solvent Accessible Surface Areas☆200May 31, 2026Updated last month
- ☆605Feb 6, 2025Updated last year