Alternatives and similar repositories for prodigy:

Users that are interested in prodigy are comparing it to the libraries listed below

• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆109Updated last year
• Kortemme-Lab / flex_ddG_tutorial
  ☆101Updated 2 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆136Updated 4 months ago
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆129Updated this week
• ikalvet / heme_binder_diffusion
  ☆112Updated 5 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆148Updated 2 weeks ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆51Updated 6 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆105Updated last month
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆151Updated 9 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆148Updated last month
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆86Updated 7 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆128Updated last month
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆94Updated last month
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆149Updated 3 weeks ago
• jcheongs / alphafold-multimer
  ☆28Updated 3 years ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆94Updated last year
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆71Updated 6 months ago
• dina-lab3D / CombFold
  ☆80Updated 5 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆56Updated last week
• Kuhlman-Lab / evopro
  ☆73Updated last month
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆122Updated 3 years ago
• ncbi / SSDraw
  ☆84Updated last year
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆158Updated 2 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 9 months ago
• guyujun / pyrosetta-basic
  ☆156Updated 3 years ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆127Updated last month
• jproney / AF2Rank
  ☆100Updated 2 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 11 months ago