haddocking / prodigy
Predict the binding affinity of protein-protein complexes from structural data
☆122Updated 5 months ago
Alternatives and similar repositories for prodigy:
Users that are interested in prodigy are comparing it to the libraries listed below
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆111Updated last year
- Official repo of the modular BioExcel version of HADDOCK☆135Updated this week
- ☆107Updated 2 years ago
- Code for ColabDock paper☆137Updated 5 months ago
- ☆119Updated 6 months ago
- Set of useful HADDOCK utility scripts☆51Updated 7 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆156Updated last month
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- Protein folding in Pymol☆108Updated 2 months ago
- In silico directed evolution of peptide binders with AlphaFold☆158Updated 2 months ago
- Predict the structure of immune receptor proteins☆133Updated 2 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆124Updated 3 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆152Updated last month
- Convenience Python APIs for antibody numbering using ANARCI☆94Updated 2 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆91Updated 8 months ago
- Rifdock Library for Conformational Search☆152Updated 10 months ago
- ☆123Updated last year
- ☆81Updated 6 months ago
- ☆28Updated 3 years ago
- An accurate and trainable end-to-end protein-ligand docking framework☆80Updated 2 weeks ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆132Updated 2 months ago
- AlphaFold-initiated replica exchange protein docking☆76Updated last month
- A bunch of shell utilities for dealing the silent files☆58Updated 3 weeks ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆95Updated last year
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆148Updated last year
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆112Updated 2 weeks ago
- ☆158Updated 3 years ago
- open source code for Tencent tFold☆95Updated 3 weeks ago
- ☆49Updated 2 weeks ago
- Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.☆26Updated 2 years ago