Predict the binding affinity of protein-protein complexes from structural data
☆197Oct 3, 2025Updated 11 months ago
Alternatives and similar repositories for prodigy
Users that are interested in prodigy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repo of the modular BioExcel version of HADDOCK☆275Updated this week
- Prediction of Protein-Small molecule binding affinities☆22Oct 1, 2025Updated 11 months ago
- EvolveX, a de novo antibody computational design pipeline.☆24Sep 18, 2025Updated last year
- open source repository☆149Nov 30, 2023Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆272Sep 9, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆418Aug 7, 2024Updated 2 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆429Feb 26, 2026Updated 6 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆55Jun 22, 2026Updated 2 months ago
- Official Implementation of IgGM☆228May 28, 2026Updated 3 months ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆408Sep 6, 2026Updated last week
- User friendly and accurate binder design pipeline☆1,215Aug 12, 2026Updated last month
- A dependency-free cross-platform swiss army knife for PDB files.☆457Jun 10, 2026Updated 3 months ago
- AlphaBind code + model accompanying pre-print☆94Jul 24, 2025Updated last year
- Set of useful HADDOCK utility scripts☆57Sep 19, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆532Mar 5, 2026Updated 6 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆272Jan 3, 2026Updated 8 months ago
- Improved antibody structure-based design using inverse folding☆176Dec 9, 2025Updated 9 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆431Sep 9, 2026Updated last week
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆117Apr 15, 2026Updated 5 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆291Apr 24, 2026Updated 4 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆84Jul 2, 2025Updated last year
- ☆159Jul 28, 2026Updated last month
- Official repository of PXDesign☆262Dec 31, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆191Oct 7, 2025Updated 11 months ago
- PDBFixer fixes problems in PDB files☆671Mar 10, 2026Updated 6 months ago
- ☆102Jul 24, 2026Updated last month
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 5 months ago
- ☆96Nov 25, 2025Updated 9 months ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆778Jun 19, 2024Updated 2 years ago
- composite-objective protein design☆370Updated this week
- Masif seed paper repository☆174Sep 22, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆135Feb 26, 2025Updated last year
- Machine learning-driven antibody design☆65Jul 5, 2023Updated 3 years ago
- Making Protein Design accessible to all via Google Colab!☆939Aug 28, 2026Updated 3 weeks ago
- Making Protein Language Modeling Accessible to All Biologists☆169Updated this week
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆69Aug 26, 2025Updated last year
- ☆635Feb 6, 2025Updated last year
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆160Jul 10, 2026Updated 2 months ago