haddocking / prodigy
Predict the binding affinity of protein-protein complexes from structural data
☆128Updated 2 weeks ago
Alternatives and similar repositories for prodigy:
Users that are interested in prodigy are comparing it to the libraries listed below
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆111Updated last year
- Official repo of the modular BioExcel version of HADDOCK☆139Updated this week
- ☆109Updated 2 years ago
- ☆122Updated 6 months ago
- Code for ColabDock paper☆139Updated this week
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆154Updated 2 months ago
- Set of useful HADDOCK utility scripts☆51Updated 8 months ago
- Predict the structure of immune receptor proteins☆133Updated 3 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆164Updated 2 months ago
- Convenience Python APIs for antibody numbering using ANARCI☆95Updated 3 months ago
- In silico directed evolution of peptide binders with AlphaFold☆163Updated 3 weeks ago
- Protein folding in Pymol☆108Updated 3 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆94Updated 9 months ago
- Rifdock Library for Conformational Search☆154Updated 11 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆148Updated last year
- AlphaFold-initiated replica exchange protein docking☆79Updated last month
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆273Updated 3 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆124Updated 3 years ago
- Masif seed paper repository☆150Updated last year
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆159Updated 2 years ago
- ☆104Updated 9 months ago
- A bunch of shell utilities for dealing the silent files☆59Updated last month
- Python3 translation of AutoDockTools☆113Updated 11 months ago
- ☆160Updated 3 years ago
- Making Protein Modeling Accessible to All Biologists☆110Updated last week
- Protein-ligand structure prediction☆214Updated 9 months ago
- ☆49Updated last month
- Improved antibody structure-based design using inverse folding☆115Updated last week
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆136Updated 2 weeks ago