Alternatives and similar repositories for prodigy:

Users that are interested in prodigy are comparing it to the libraries listed below

• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆106Updated last year
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆125Updated this week
• Kortemme-Lab / flex_ddG_tutorial
  ☆99Updated 2 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆134Updated 4 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆144Updated 5 months ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆51Updated 5 months ago
• ikalvet / heme_binder_diffusion
  ☆107Updated 4 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆140Updated 5 months ago
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆84Updated 6 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆125Updated 2 weeks ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆104Updated 3 weeks ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆92Updated 2 weeks ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆145Updated 2 weeks ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆119Updated 2 weeks ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆96Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆122Updated 3 years ago
• guyujun / pyrosetta-basic
  ☆156Updated 3 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 8 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆156Updated 2 years ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆149Updated 9 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆55Updated 2 months ago
• dina-lab3D / CombFold
  ☆80Updated 4 months ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆169Updated 5 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆144Updated last year
• Kuhlman-Lab / evopro
  ☆72Updated this week
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆200Updated 8 months ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆80Updated 4 years ago
• ncbi / SSDraw
  ☆82Updated last year
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆69Updated 6 months ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆111Updated 3 years ago