Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing
☆43Jun 8, 2026Updated 2 months ago
Alternatives and similar repositories for isopedia
Users that are interested in isopedia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Apr 20, 2026Updated 4 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated last month
- ☆19Jul 15, 2026Updated last month
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 10 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Callable Loci... and more☆21Apr 8, 2026Updated 4 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- ☆28Dec 22, 2025Updated 8 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 5 months ago
- TD2☆41May 17, 2026Updated 3 months ago
- Spiritual successor to picard for sequencing qc☆60Jul 19, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last month
- Align sequences and then parse features.☆17Oct 24, 2025Updated 10 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- Tool for drawing gene structures from genome annotation files.☆22Jun 20, 2026Updated 2 months ago
- Structural Variants ANnotator (SVAN)☆18Jun 27, 2026Updated last month
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated 3 weeks ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 8 months ago
- Rust-based sra-tools☆72Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆116Aug 5, 2026Updated 2 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- gia: Genomic Interval Arithmetic☆68Aug 21, 2024Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Fast interval intersection library☆46Jul 14, 2026Updated last month
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 9 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Creating alignment plots from bam files☆132Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 3 months ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- GRAph-based Finding of Individual Motif Occurrences☆33Aug 29, 2024Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆41Mar 13, 2025Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 7 months ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago