josieparis / gatk-snp-callingLinks
Full GATK SNP calling pipeline
☆22Updated 2 years ago
Alternatives and similar repositories for gatk-snp-calling
Users that are interested in gatk-snp-calling are comparing it to the libraries listed below
Sorting:
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 7 months ago
- ☆28Updated 2 years ago
- Scripts to convert between file formats for various analyses☆16Updated 5 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated 2 years ago
- A toolkit for identifying recombination and recombinant genotypes☆25Updated last week
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆17Updated last week
- Pan-genome Construction and Population Structure Variation Calling pipeline☆43Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- ☆17Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- issues for semina "Data Visulization"☆13Updated 4 months ago
- read and analyse RepeatMasker output☆25Updated 2 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆18Updated 5 months ago
- ☆18Updated 2 years ago
- ☆24Updated 2 years ago
- Killifish genomics scripts☆12Updated 4 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 4 months ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Updated 6 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Updated 3 years ago