josieparis / gatk-snp-calling
Full GATK SNP calling pipeline
☆21Updated last year
Alternatives and similar repositories for gatk-snp-calling:
Users that are interested in gatk-snp-calling are comparing it to the libraries listed below
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated last month
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- Scripts to convert between file formats for various analyses☆16Updated 2 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆24Updated 3 weeks ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.☆9Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated 3 months ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- ☆18Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- ☆24Updated 2 years ago
- Automated pipeline for running CoalHMM☆12Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆19Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆18Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 6 months ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Sorting and subsampling phylogenomic datasets☆23Updated last week
- ☆40Updated last year
- Genome Annotation Pipeline☆35Updated 7 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago