☆21Sep 16, 2026Updated 3 weeks ago
Alternatives and similar repositories for metadeconfoundR
Users that are interested in metadeconfoundR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jul 3, 2022Updated 4 years ago
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic data☆32Sep 8, 2026Updated last month
- An algorithm for clustering metagenomic sequences.☆43Aug 5, 2026Updated 2 months ago
- Single-cell Analysis of Host-Microbiome Interactions☆11Jul 17, 2025Updated last year
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mandel Lab Protocols☆12Sep 3, 2026Updated last month
- This repository accompanies our Cell Metabolism manuscript "Plasma protein-based organ-specific aging and mortality models unveil disease…☆16Jan 5, 2026Updated 9 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- ☆14Nov 3, 2021Updated 4 years ago
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆15Oct 6, 2023Updated 3 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 10 years ago
- This repository contains all CWL descriptions of the MGnify pipeline version 5.0.☆24Apr 21, 2026Updated 5 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆43Updated this week
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Feb 22, 2022Updated 4 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆56Sep 28, 2026Updated 2 weeks ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- A tool for identifying active prophage elements through read mapping☆14Oct 9, 2023Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Grid representation and CNN classification for time-series☆18Mar 23, 2019Updated 7 years ago
- ☆85Aug 23, 2026Updated last month
- Trimming tool for Oxford Nanopore sequence data☆22Jun 22, 2021Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆53Feb 23, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Example code from metagenomics book (https://www.gitbook.com/book/kyclark/metagenomics/details)☆18Feb 1, 2019Updated 7 years ago
- MAGScoT - a MAG scoring and refinement tool☆50Apr 8, 2026Updated 6 months ago
- R package to predict microbial loads☆21Updated this week
- ☆17Jun 7, 2026Updated 4 months ago
- ☆33Oct 1, 2026Updated last week
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 10 months ago
- A collection of color palettes inspired by plants and pop culture.☆22Sep 3, 2025Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆186Jul 17, 2026Updated 2 months ago
- Machine Learning in NeuroImaging (MLNI) is a python package that performs various tasks using neuroimaging data.☆26Jul 16, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- An ultra light YAML-based pipeline execution engine☆20Aug 30, 2017Updated 9 years ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Oct 7, 2026Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated last month
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago