This repository contains the source code for the tappAS application. See README for details.
☆21Mar 9, 2026Updated last week
Alternatives and similar repositories for tappAS
Users that are interested in tappAS are comparing it to the libraries listed below
Sorting:
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- ☆18Apr 18, 2024Updated last year
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆12Dec 7, 2022Updated 3 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- A Python library to visualize and analyze long-read transcriptomes☆67Jan 19, 2026Updated 2 months ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- ☆16May 25, 2021Updated 4 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- Bash script for promoter sequences extraction☆16Aug 7, 2018Updated 7 years ago
- Frequently used commands in Bioinformatics☆23Feb 9, 2026Updated last month
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- ☆21May 27, 2024Updated last year
- A pipeline for isoseq☆23Jun 8, 2018Updated 7 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆296Nov 6, 2025Updated 4 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆233Jul 9, 2025Updated 8 months ago
- ☆19Feb 23, 2022Updated 4 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- ☆32Feb 24, 2026Updated 3 weeks ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- ☆12Apr 16, 2021Updated 4 years ago
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- Statistical power studies for multi-omics experiments.☆32Jan 18, 2025Updated last year
- a web-based R shiny application that wraps DESeq2 R package☆13Apr 19, 2020Updated 5 years ago
- ☆11Sep 17, 2020Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 2 months ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆12Aug 23, 2022Updated 3 years ago
- PacBio BAM C++ library☆20Aug 14, 2023Updated 2 years ago
- ☆11Dec 15, 2025Updated 3 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆157Jan 25, 2024Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Mar 25, 2025Updated 11 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Mar 12, 2026Updated last week
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 5 years ago