A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
☆111Aug 18, 2025Updated last year
Alternatives and similar repositories for grabseqs
Users that are interested in grabseqs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆369Aug 16, 2026Updated 2 weeks ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 7 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆52May 5, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆110Dec 11, 2023Updated 2 years ago
- RNA virus analysis toolkit☆22Updated this week
- ViroBLAST standalone package☆16Apr 4, 2024Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 3 years ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆700Jul 2, 2025Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆70Apr 10, 2025Updated last year
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆210Aug 25, 2025Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Updated this week
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- A tool for exploring large trees in the browser☆133Jul 27, 2026Updated last month
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆298Jun 10, 2026Updated 2 months ago
- Reference-guided multiple sequence alignment of viral genomes☆73May 30, 2026Updated 3 months ago
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 4 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated 3 weeks ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆70Oct 29, 2020Updated 5 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Neural network classification of TE☆102Apr 3, 2026Updated 4 months ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calculate GC% and GC deviation for circular genomes☆17Oct 15, 2025Updated 10 months ago
- Gene cluster comparison figure generator☆652Dec 22, 2025Updated 8 months ago
- ☆47Jun 27, 2023Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆354Jul 27, 2026Updated last month
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 27, 2023Updated 2 years ago
- A genome visualization python package for comparative genomics☆422Jun 14, 2026Updated 2 months ago