Alternatives and similar repositories for protein-design-tutorials

Users that are interested in protein-design-tutorials are comparing it to the libraries listed below

• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆147Updated 5 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆163Updated last year
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆148Updated this week
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆159Updated 8 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆162Updated 2 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆126Updated 3 years ago
• varun-shanker / structural-evolution
  ☆114Updated last year
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆110Updated last week
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆194Updated this week
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆105Updated 4 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆161Updated last year
• ikalvet / heme_binder_diffusion
  ☆140Updated 2 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆112Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆193Updated last month
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆159Updated 2 weeks ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆164Updated last year
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆164Updated 2 years ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆237Updated last month
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆203Updated 4 months ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆119Updated last week
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆159Updated 5 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆145Updated last year
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 4 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆113Updated 6 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆215Updated 2 years ago
• jertubiana / ScanNet
  ☆133Updated 3 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆138Updated last month
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆99Updated 6 months ago