Tutorials, cheat sheets, and other resources for computational methods for protein design.
☆137Aug 15, 2023Updated 3 years ago
Alternatives and similar repositories for protein-design-tutorials
Users that are interested in protein-design-tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆185Oct 27, 2021Updated 4 years ago
- List of papers about Proteins Design using Deep Learning☆1,970Aug 15, 2026Updated 2 weeks ago
- Making Protein Design accessible to all via Google Colab!☆934Updated this week
- Rifdock Library for Conformational Search☆176May 16, 2024Updated 2 years ago
- A compilation of deep learning methods for protein design☆95Nov 5, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆708Aug 13, 2026Updated 2 weeks ago
- protein docking stuff☆57Apr 2, 2026Updated 4 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 9 months ago
- ☆15Mar 28, 2025Updated last year
- RosettaDesign using PyRosetta☆33Aug 22, 2019Updated 7 years ago
- ☆95Nov 25, 2025Updated 9 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆264Mar 26, 2026Updated 5 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆160Jul 28, 2026Updated last month
- Protein hallucination and inpainting with RoseTTAFold☆285Mar 30, 2023Updated 3 years ago
- Python Toolbox For Rosetta Silent Files Processing☆17May 23, 2019Updated 7 years ago
- A bunch of shell utilities for dealing the silent files☆80Apr 6, 2026Updated 4 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆55Jun 22, 2026Updated 2 months ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated last year
- ☆12May 16, 2020Updated 6 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆149Nov 11, 2025Updated 9 months ago
- Code for the ProteinMPNN paper☆1,835Aug 14, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Mar 27, 2020Updated 6 years ago
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆20Aug 20, 2021Updated 5 years ago
- A short course on proteins and protein design aimed at early career students☆173Jul 19, 2024Updated 2 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆24Mar 6, 2025Updated last year
- Colorblind-friendly, perceptually uniform palettes for pymol☆21Jan 25, 2021Updated 5 years ago
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 5 months ago
- ☆13Sep 29, 2023Updated 2 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Jun 28, 2026Updated 2 months ago
- Parametric Building of de novo Functional Topologies☆46Mar 11, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Diffusion-based all-atom protein generative model.☆238Aug 27, 2025Updated last year
- ☆212Apr 21, 2025Updated last year
- ☆31Dec 12, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆35Jul 16, 2024Updated 2 years ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆131Oct 24, 2025Updated 10 months ago