Alternatives and similar repositories for DL4Proteins-notebooks:

Users that are interested in DL4Proteins-notebooks are comparing it to the libraries listed below

• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆492Updated last week
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆167Updated 2 months ago
• nrbennet / dl_binder_design
  ☆302Updated 8 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆310Updated 5 months ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆388Updated 9 months ago
• dauparas / LigandMPNN
  ☆350Updated 2 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆710Updated last week
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆235Updated 3 weeks ago
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆434Updated 2 weeks ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆292Updated this week
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆198Updated last year
• KosinskiLab / AlphaPulldown
  ☆266Updated last week
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆353Updated last year
• ChatMol / ChatMol
  ChatMol
  ☆221Updated last month
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆355Updated 10 months ago
• RosettaCommons / RFantibody
  ☆169Updated last week
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆288Updated 11 months ago
• microsoft / protein-sequence-models
  ☆245Updated 8 months ago
• PatWalters / resources_2025
  Machine Learning in Drug Discovery Resources 2024
  ☆208Updated 2 months ago
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆269Updated 2 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆256Updated 2 years ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆317Updated last year
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆231Updated 3 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆294Updated 6 months ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆124Updated 3 years ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆682Updated 2 weeks ago
• RosettaCommons / rosetta
  The Rosetta Bio-macromolecule modeling package.
  ☆249Updated this week
• ml4bio / RhoFold
  Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach
  ☆130Updated last week
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆253Updated last year
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆951Updated last week