Alternatives and similar repositories for DL4Proteins-notebooks:

Users that are interested in DL4Proteins-notebooks are comparing it to the libraries listed below

• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆517Updated last month
• nrbennet / dl_binder_design
  ☆308Updated 9 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆310Updated 6 months ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆390Updated 10 months ago
• dauparas / LigandMPNN
  ☆368Updated 3 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆725Updated last month
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆358Updated 11 months ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆300Updated last week
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆169Updated 3 months ago
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆444Updated last month
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆249Updated last month
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆355Updated last year
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆289Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆199Updated last year
• RosettaCommons / RFantibody
  ☆194Updated 3 weeks ago
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆277Updated 3 months ago
• microsoft / protein-sequence-models
  ☆246Updated 9 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆258Updated 2 years ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆564Updated 8 months ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆318Updated last year
• baker-laboratory / RoseTTAFold-All-Atom
  ☆707Updated 9 months ago
• KosinskiLab / AlphaPulldown
  ☆269Updated 2 weeks ago
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆437Updated 4 months ago
• PatWalters / resources_2025
  Machine Learning in Drug Discovery Resources 2024
  ☆209Updated last week
• biolists / folding_tools
  A collection of *fold* tools
  ☆293Updated 7 months ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆695Updated 2 weeks ago
• uw-ipd / RoseTTAFold2
  ☆191Updated 2 weeks ago
• ChatMol / ChatMol
  ChatMol
  ☆225Updated last month
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆179Updated 7 months ago
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,259Updated 8 months ago