Alternatives and similar repositories for DL4Proteins-notebooks

Users that are interested in DL4Proteins-notebooks are comparing it to the libraries listed below

• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆640Updated 2 weeks ago
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆190Updated 6 months ago
• nrbennet / dl_binder_design
  ☆342Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆317Updated 9 months ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆426Updated last year
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆773Updated 2 months ago
• dauparas / LigandMPNN
  ☆426Updated 6 months ago
• RosettaCommons / RFantibody
  ☆263Updated 4 months ago
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆280Updated 2 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆371Updated last year
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆340Updated last month
• ChatMol / ChatMol
  ChatMol
  ☆234Updated 5 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆365Updated last year
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆489Updated last week
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆305Updated last year
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆600Updated last year
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆315Updated 2 weeks ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆265Updated 2 years ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆297Updated 2 weeks ago
• RosettaCommons / rosetta
  The Rosetta Bio-macromolecule modeling package.
  ☆310Updated last week
• KosinskiLab / AlphaPulldown
  ☆286Updated this week
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆342Updated 2 years ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆736Updated 2 months ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆199Updated 3 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆741Updated 2 months ago
• microsoft / protein-sequence-models
  ☆252Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆212Updated last year
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆341Updated 2 weeks ago
• PatWalters / resources_2025
  Machine Learning in Drug Discovery Resources 2024
  ☆228Updated 3 months ago
• Multiomics-Analytics-Group / course_protein_language_modeling
  ☆39Updated 2 weeks ago