Alternatives and similar repositories for silent_tools

Users that are interested in silent_tools are comparing it to the libraries listed below

• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆133Updated 3 months ago
• ELELAB / RosettaDDGPrediction
  ☆84Updated 2 months ago
• yehlincho / BoltzDesign1
  ☆236Updated last week
• ikalvet / heme_binder_diffusion
  ☆146Updated 6 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆198Updated last month
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆70Updated 7 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆116Updated 3 months ago
• snufoodbiochem / Alphafold3_tools
  ☆25Updated last year
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆165Updated 2 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆141Updated 3 years ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆80Updated 2 months ago
• bunzela / AIzymes
  ☆66Updated 3 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆67Updated 11 months ago
• Mingchenchen / PPIFlow
  de novo design of high affinity biological binders
  ☆122Updated this week
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆224Updated 6 months ago
• Kuhlman-Lab / evopro
  ☆94Updated 3 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆95Updated 2 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆89Updated 6 months ago
• zhanghaicang / carbonmatrix_public
  ☆118Updated last month
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆108Updated 2 weeks ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 11 months ago
• hongliangduan / HighFold
  ☆38Updated last year
• regeneron-mpds / propermab
  ☆45Updated 10 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆72Updated 5 months ago
• levinthal / Pallatom
  ☆133Updated 8 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆171Updated 2 months ago
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆46Updated 6 months ago
• ai4protein / Pro-Prime
  ☆76Updated 5 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆57Updated 7 months ago