Alternatives and similar repositories for ProteinDesignLabs

Users that are interested in ProteinDesignLabs are comparing it to the libraries listed below

• RosettaCommons / RFantibody
  ☆439Updated last week
• RosettaCommons / RFdiffusion2
  Inference code for RFdiffusion2
  ☆390Updated 2 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆326Updated last year
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆360Updated 3 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆261Updated last month
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆322Updated 4 months ago
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆329Updated 7 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆224Updated 6 months ago
• nrbennet / dl_binder_design
  ☆386Updated last year
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆277Updated 2 years ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆229Updated 5 months ago
• ChatMol / ChatMol
  ChatMol
  ☆243Updated 2 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆131Updated 2 years ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆170Updated 2 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆220Updated 2 years ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆352Updated 2 years ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆403Updated 2 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆225Updated 8 months ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆385Updated 3 weeks ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆171Updated 2 months ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆222Updated 3 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆238Updated 6 months ago
• ikalvet / heme_binder_diffusion
  ☆146Updated 6 months ago
• uw-ipd / RoseTTAFold2
  ☆208Updated 9 months ago
• varun-shanker / structural-evolution
  ☆122Updated last year
• guyujun / pyrosetta-basic
  ☆181Updated 4 years ago
• dauparas / LigandMPNN
  ☆533Updated last year
• Graylab / DL4Proteins-notebooks
  Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
  ☆624Updated 2 weeks ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆151Updated 9 months ago
• westlake-repl / ProTrek
  ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model
  ☆191Updated 2 months ago