JosePereiraUA / rosetta-scripts
Some Rosetta Scripts that allow for various simple tasks
☆14Updated 5 years ago
Alternatives and similar repositories for rosetta-scripts:
Users that are interested in rosetta-scripts are comparing it to the libraries listed below
- Making Protein folding accessible to all!☆22Updated last year
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆26Updated 3 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆46Updated 4 months ago
- ☆13Updated last year
- ☆43Updated 7 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆56Updated 2 months ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆26Updated 3 months ago
- Kuhlman Lab Installation of AlphaFold3☆25Updated last month
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆23Updated 5 years ago
- Small_molecule_binder_design_use_pseudocycles☆18Updated 5 months ago
- Rosetta Funclib☆20Updated 4 years ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆18Updated last year
- ☆26Updated 9 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆39Updated 5 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 2 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆31Updated last month
- Binding pocket optimization based on force fields and docking scoring functions☆31Updated last month
- Analysis of alphafold and colabfold results☆27Updated 3 weeks ago
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- PyPEF – Pythonic Protein Engineering Framework☆24Updated 2 weeks ago
- PyDock Tutorial☆31Updated 6 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Automated construction of protein chimeras and their analysis.☆14Updated last year
- Explicit crosslinks in AlphaFold 3☆21Updated last month
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆29Updated last year
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆32Updated last year