Alternatives and similar repositories for masif_seed

Users that are interested in masif_seed are comparing it to the libraries listed below

• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆179Updated 5 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆144Updated 5 months ago
• jertubiana / ScanNet
  ☆128Updated 3 weeks ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆141Updated 2 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆219Updated 11 months ago
• ikalvet / heme_binder_diffusion
  ☆133Updated 9 months ago
• varun-shanker / structural-evolution
  ☆109Updated last year
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆104Updated 4 months ago
• zhanghaicang / carbonmatrix_public
  ☆115Updated last month
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆158Updated 4 months ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆99Updated last month
• Kortemme-Lab / flex_ddG_tutorial
  ☆117Updated 2 years ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆72Updated 6 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆131Updated last week
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆134Updated last year
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆209Updated last month
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆113Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆152Updated last year
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆188Updated 3 months ago
• levinthal / Pallatom
  ☆100Updated last month
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆157Updated 9 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆160Updated last year
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆109Updated 5 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆91Updated 7 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆127Updated 2 months ago
• CAODH / SurfDock
  SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction
  ☆199Updated last week
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆73Updated 2 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆94Updated 2 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆160Updated 2 years ago