Alternatives and similar repositories for PyRosetta.notebooks

Users that are interested in PyRosetta.notebooks are comparing it to the libraries listed below

• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆796Updated 3 weeks ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆765Updated last month
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆751Updated 2 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆371Updated 2 years ago
• nrbennet / dl_binder_design
  ☆353Updated last year
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆438Updated last year
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆365Updated last year
• gnina / gnina
  A deep learning framework for molecular docking
  ☆768Updated last month
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆267Updated 2 years ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆685Updated last year
• pharmai / plip
  Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme …
  ☆580Updated 2 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆750Updated 3 months ago
• pablo-arantes / making-it-rain
  Cloud-based molecular simulations for everyone
  ☆443Updated last week
• dauparas / LigandMPNN
  ☆439Updated 7 months ago
• Graylab / DL4Proteins-notebooks
  Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
  ☆421Updated 5 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆298Updated last month
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆318Updated 10 months ago
• ccsb-scripps / AutoDock-Vina
  AutoDock Vina
  ☆800Updated 2 months ago
• kalininalab / alphafold_non_docker
  AlphaFold2 non-docker setup
  ☆365Updated last year
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆344Updated last month
• RosettaCommons / rosetta
  The Rosetta Bio-macromolecule modeling package.
  ☆320Updated last week
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆1,060Updated last week
• openmm / pdbfixer
  PDBFixer fixes problems in PDB files
  ☆573Updated 6 months ago
• Discngine / fpocket
  fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scien…
  ☆383Updated last year
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆320Updated last month
• KosinskiLab / AlphaPulldown
  ☆292Updated this week
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,441Updated last year
• RosettaCommons / RFantibody
  ☆275Updated 5 months ago
• Pymol-Scripts / Pymol-script-repo
  Collected scripts for Pymol
  ☆490Updated last month
• ccsb-scripps / AutoDock-GPU
  AutoDock for GPUs and other accelerators
  ☆515Updated 7 months ago