Alternatives and similar repositories for PyRosetta.notebooks

Users that are interested in PyRosetta.notebooks are comparing it to the libraries listed below

• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆539Updated this week
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆733Updated 3 weeks ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆360Updated last year
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆709Updated last month
• nrbennet / dl_binder_design
  ☆313Updated 10 months ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆395Updated 10 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆360Updated last year
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆656Updated 11 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆259Updated 2 years ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆312Updated 7 months ago
• kalininalab / alphafold_non_docker
  AlphaFold2 non-docker setup
  ☆357Updated last year
• dauparas / LigandMPNN
  ☆382Updated 4 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆293Updated 8 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆722Updated last week
• pablo-arantes / making-it-rain
  Cloud-based molecular simulations for everyone
  ☆438Updated last month
• KosinskiLab / AlphaPulldown
  ☆277Updated last week
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆284Updated 4 months ago
• pharmai / plip
  Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme …
  ☆536Updated 2 weeks ago
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,284Updated 9 months ago
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆328Updated last month
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆984Updated this week
• pb3lab / ibm3202
  Google Colab Tutorials for IBM3202
  ☆258Updated 7 months ago
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆352Updated last year
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆292Updated last year
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆569Updated 6 months ago
• Graylab / DL4Proteins-notebooks
  Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
  ☆390Updated 2 months ago
• gnina / gnina
  A deep learning framework for molecular docking
  ☆723Updated 2 weeks ago
• RosettaCommons / rosetta
  The Rosetta Bio-macromolecule modeling package.
  ☆269Updated this week
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆267Updated 3 months ago
• Discngine / fpocket
  fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scien…
  ☆354Updated 8 months ago