Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
☆684Feb 27, 2026Updated 2 months ago
Alternatives and similar repositories for PyRosetta.notebooks
Users that are interested in PyRosetta.notebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆183Oct 27, 2021Updated 4 years ago
- Making Protein Design accessible to all via Google Colab!☆909Apr 6, 2026Updated 3 weeks ago
- Code for the ProteinMPNN paper☆1,706Aug 14, 2024Updated last year
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆415Sep 3, 2023Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆281Mar 30, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for running RFdiffusion☆2,849Updated this week
- Making Protein folding accessible to all!☆2,737Mar 17, 2026Updated last month
- Public RFDiffusionAA repo☆480Jul 9, 2024Updated last year
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆746Jun 19, 2024Updated last year
- ☆567Feb 6, 2025Updated last year
- This package contains deep learning models and related scripts for RoseTTAFold☆2,241Feb 15, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆235Aug 27, 2025Updated 8 months ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆174Nov 30, 2022Updated 3 years ago
- Rifdock Library for Conformational Search☆172May 16, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆802May 27, 2025Updated 11 months ago
- List of papers about Proteins Design using Deep Learning☆1,923Updated this week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- PDBFixer fixes problems in PDB files☆642Mar 10, 2026Updated last month
- trRosetta for protein design☆186May 15, 2021Updated 4 years ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆391Sep 16, 2025Updated 7 months ago
- User friendly and accurate binder design pipeline☆1,080Apr 17, 2026Updated 2 weeks ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆133Aug 15, 2023Updated 2 years ago
- Listing of papers about machine learning for proteins.☆1,701May 31, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for our paper "Protein sequence design with a learned potential"☆83Sep 8, 2023Updated 2 years ago
- ColabFold on your local PC☆850Apr 21, 2026Updated last week
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,050Feb 7, 2024Updated 2 years ago
- ☆150Aug 17, 2022Updated 3 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆38Oct 12, 2022Updated 3 years ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,347Dec 16, 2025Updated 4 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆359Jun 29, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆212Apr 21, 2025Updated last year
- The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.☆414Updated this week
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆252Jul 24, 2025Updated 9 months ago
- Collected scripts for Pymol☆525Mar 1, 2026Updated 2 months ago
- Generative Language Modeling for Antibody Design☆188Oct 5, 2024Updated last year
- A dependency-free cross-platform swiss army knife for PDB files.☆450Feb 3, 2026Updated 2 months ago
- Demos of many Rosetta applications☆25Jun 10, 2025Updated 10 months ago