DrLeucine / how_to_create_a_proteinLinks
A short course on proteins and protein design aimed at early career students
☆157Updated last year
Alternatives and similar repositories for how_to_create_a_protein
Users that are interested in how_to_create_a_protein are comparing it to the libraries listed below
Sorting:
- Sandbox for Deep-Learning based Computational Protein Design☆117Updated 2 weeks ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆134Updated this week
- ProtMamba: a homology-aware but alignment-free protein state space model☆79Updated 4 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆153Updated 2 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆266Updated last year
- bioinformatics tools running on modal☆104Updated 3 weeks ago
- PLM based active learning model for protein engineering☆84Updated last year
- List of computational protein design research labs☆203Updated 8 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆164Updated last year
- ☆127Updated last year
- Improved antibody structure-based design using inverse folding☆140Updated 2 months ago
- Plugin for folding sequences directly in PyMOL☆104Updated 2 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆120Updated 2 years ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆119Updated 3 weeks ago
- Efficient evolution from protein language models☆217Updated 2 years ago
- Directed evolution of proteins in sequence space with gradients☆91Updated last week
- Hands-on AlphaFold implementation for educational purposes.☆91Updated 6 months ago
- ☆254Updated last year
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆164Updated last year
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆138Updated last week
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆164Updated 6 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆160Updated 2 years ago
- Combinatorial antibiotic generation☆189Updated last week
- Compressing protein structures effectively with torsion angles☆180Updated 3 months ago
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- ☆116Updated 3 months ago
- Template-based protein design with Raygun☆74Updated this week
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆104Updated 3 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆142Updated 6 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 3 years ago