Alternatives and similar repositories for flex_ddG_tutorial

Users that are interested in flex_ddG_tutorial are comparing it to the libraries listed below

• ikalvet / heme_binder_diffusion
  ☆141Updated 4 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆162Updated 8 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆148Updated 7 months ago
• yehlincho / BoltzDesign1
  ☆225Updated 3 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆166Updated 3 weeks ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆71Updated 2 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆165Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆211Updated 3 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆123Updated 2 years ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆156Updated 3 weeks ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆150Updated 2 years ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆165Updated last month
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆82Updated 4 months ago
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆207Updated last week
• ELELAB / RosettaDDGPrediction
  ☆83Updated last week
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆64Updated 7 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆61Updated 9 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆158Updated 2 months ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆115Updated 8 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆165Updated 2 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆235Updated 4 months ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆205Updated last month
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆247Updated 2 weeks ago
• guyujun / pyrosetta-basic
  ☆176Updated 4 years ago
• zchwang / CataPro
  A generalized enzyme kinetics parameter prediction model.
  ☆71Updated 2 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆127Updated last week
• zhanghaicang / carbonmatrix_public
  ☆118Updated 5 months ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆109Updated 6 months ago