Alternatives and similar repositories for design_tools

Users that are interested in design_tools are comparing it to the libraries listed below

• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆136Updated last month
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆65Updated 2 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆181Updated 5 months ago
• ikalvet / heme_binder_diffusion
  ☆134Updated 3 weeks ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆159Updated last week
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆139Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆114Updated last month
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆156Updated 2 years ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆120Updated 2 years ago
• yehlincho / BoltzDesign1
  ☆184Updated last week
• zhanghaicang / carbonmatrix_public
  ☆115Updated last month
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆148Updated 6 months ago
• Kuhlman-Lab / evopro
  ☆85Updated last week
• levinthal / Pallatom
  ☆105Updated 2 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆94Updated last week
• ELELAB / RosettaDDGPrediction
  ☆72Updated 5 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆109Updated 6 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆115Updated last year
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆222Updated this week
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆131Updated 8 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆142Updated 3 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆62Updated last month
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆146Updated 4 months ago
• jertubiana / ScanNet
  ☆130Updated last month
• varun-shanker / structural-evolution
  ☆111Updated last year
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆74Updated 6 months ago
• ai4protein / Pro-Prime
  ☆68Updated 2 months ago
• jproney / AF2Rank
  ☆110Updated 2 years ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆96Updated last year
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆102Updated 2 months ago