A compilation of deep learning methods for protein design
☆95Nov 5, 2022Updated 3 years ago
Alternatives and similar repositories for design_tools
Users that are interested in design_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆62Oct 28, 2025Updated 10 months ago
- List of papers about Proteins Design using Deep Learning☆1,976Aug 15, 2026Updated last month
- A collection of *fold* tools☆302Aug 8, 2025Updated last year
- ☆44Aug 29, 2025Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Making Protein Design accessible to all via Google Colab!☆939Aug 28, 2026Updated 3 weeks ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆138Aug 15, 2023Updated 3 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- ☆260Jul 31, 2024Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- ☆146Jun 3, 2025Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆50Nov 4, 2025Updated 10 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆92Dec 4, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of *fold* tools☆23Nov 10, 2022Updated 3 years ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 10 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆424Jul 3, 2023Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆20Aug 31, 2026Updated 3 weeks ago
- Making Protein folding accessible to all!☆26Mar 22, 2026Updated 6 months ago
- ☆12Dec 2, 2024Updated last year
- ☆52Aug 24, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Dec 27, 2022Updated 3 years ago
- A generative model for programmable protein design☆833Apr 11, 2024Updated 2 years ago
- A collection of research papers for AI-based protein design☆318May 13, 2024Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆141Apr 23, 2026Updated 4 months ago
- ☆47Sep 16, 2024Updated 2 years ago
- ☆15Updated this week
- ☆15Apr 17, 2025Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 3 years ago
- Template-based protein design with Raygun☆155Jul 30, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Masif seed paper repository☆174Sep 22, 2025Updated 11 months ago
- Structure-Informed Protein Language Model☆40Feb 15, 2024Updated 2 years ago
- ☆74Feb 13, 2026Updated 7 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 10 months ago
- Listing of papers about machine learning for proteins.☆1,717May 31, 2024Updated 2 years ago
- ☆144Aug 8, 2024Updated 2 years ago
- Convergent motifs for binding sites☆27Dec 8, 2022Updated 3 years ago