Alternatives and similar repositories for design_tools

Users that are interested in design_tools are comparing it to the libraries listed below

• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆67Updated 3 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆157Updated 2 years ago
• ikalvet / heme_binder_diffusion
  ☆139Updated last month
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆189Updated last month
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆142Updated last year
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆160Updated last month
• yehlincho / BoltzDesign1
  ☆205Updated last month
• Kortemme-Lab / flex_ddG_tutorial
  ☆124Updated 3 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆146Updated 4 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆226Updated last month
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆151Updated 7 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆144Updated this week
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆119Updated 2 years ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆117Updated 2 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆109Updated 7 months ago
• jertubiana / ScanNet
  ☆131Updated 2 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆88Updated 5 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆233Updated 2 weeks ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆100Updated 2 weeks ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆157Updated 6 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆85Updated last week
• zhanghaicang / carbonmatrix_public
  ☆116Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆87Updated last month
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆135Updated 3 weeks ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆96Updated 2 years ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆133Updated 10 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆68Updated 3 years ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆63Updated 2 months ago
• levinthal / Pallatom
  ☆115Updated 3 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆84Updated 2 weeks ago