A compilation of deep learning methods for protein design
☆96Nov 5, 2022Updated 3 years ago
Alternatives and similar repositories for design_tools
Users that are interested in design_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Oct 28, 2025Updated 7 months ago
- List of papers about Proteins Design using Deep Learning☆1,931May 30, 2026Updated last week
- A collection of *fold* tools☆305Aug 8, 2025Updated 10 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- ☆43Aug 29, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Making Protein Design accessible to all via Google Colab!☆915Apr 6, 2026Updated 2 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆133Aug 15, 2023Updated 2 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated 2 years ago
- ☆258Jul 31, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆188Apr 21, 2024Updated 2 years ago
- ☆139Jun 3, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆90Dec 4, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆49Nov 4, 2025Updated 7 months ago
- A collection of *fold* tools☆24Nov 10, 2022Updated 3 years ago
- ☆581Feb 6, 2025Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆421Jul 3, 2023Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆255Mar 26, 2026Updated 2 months ago
- Making Protein folding accessible to all!☆26Mar 22, 2026Updated 2 months ago
- ☆12Dec 2, 2024Updated last year
- ☆52Jan 2, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆47Sep 16, 2024Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Dec 27, 2022Updated 3 years ago
- A generative model for programmable protein design☆820Apr 11, 2024Updated 2 years ago
- Masif seed paper repository☆171Sep 22, 2025Updated 8 months ago
- Code for our paper "Protein sequence design with a learned potential"☆83Sep 8, 2023Updated 2 years ago
- A collection of research papers for AI-based protein design☆306May 13, 2024Updated 2 years ago
- Template-based protein design with Raygun☆82Apr 12, 2026Updated last month
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆74Feb 13, 2026Updated 3 months ago
- Convergent motifs for binding sites☆27Dec 8, 2022Updated 3 years ago
- ☆138Aug 8, 2024Updated last year
- Listing of papers about machine learning for proteins.☆1,707May 31, 2024Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆279Feb 14, 2024Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆167Aug 24, 2023Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆125Apr 23, 2026Updated last month