hefeda / design_toolsLinks
A compilation of deep learning methods for protein design
☆97Updated 3 years ago
Alternatives and similar repositories for design_tools
Users that are interested in design_tools are comparing it to the libraries listed below
Sorting:
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆214Updated 4 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆168Updated 2 months ago
- Masif seed paper repository☆168Updated 3 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆173Updated 8 months ago
- ☆143Updated 5 months ago
- A bunch of shell utilities for dealing the silent files☆73Updated 3 weeks ago
- ☆135Updated 3 years ago
- Predict the structure of immune receptor proteins☆167Updated last month
- ☆230Updated 4 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆159Updated 3 weeks ago
- Code for ColabDock paper☆150Updated 7 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆124Updated 2 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆151Updated 2 years ago
- Fitness landscapes for antibodies☆96Updated this week
- Protein-ligand structure prediction☆235Updated 4 months ago
- ☆131Updated 6 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆130Updated last month
- ☆119Updated 6 months ago
- ☆84Updated last month
- Protein folding in Pymol☆127Updated last month
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆142Updated last year
- ☆137Updated 6 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆113Updated 2 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆107Updated last month
- In silico directed evolution of peptide binders with AlphaFold☆249Updated last month
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆217Updated last month
- ☆118Updated last year
- ☆93Updated 2 months ago
- Improved antibody structure-based design using inverse folding☆147Updated 2 weeks ago
- Antibody-Antigen Docking and Affinity Benchmark☆75Updated 5 years ago