hefeda / design_tools
A compilation of deep learning methods for protein design
☆97Updated 2 years ago
Alternatives and similar repositories for design_tools:
Users that are interested in design_tools are comparing it to the libraries listed below
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆155Updated last month
- Code for ColabDock paper☆137Updated 5 months ago
- ☆115Updated 5 months ago
- A bunch of shell utilities for dealing the silent files☆58Updated last week
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆150Updated last month
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆110Updated last year
- ☆123Updated last year
- Predict the structure of immune receptor proteins☆133Updated 2 months ago
- ☆104Updated 2 years ago
- Protein folding in Pymol☆107Updated 2 months ago
- Official repository of EnzymeFlow☆82Updated 3 months ago
- Improved antibody structure-based design using inverse folding☆105Updated 2 weeks ago
- Masif seed paper repository☆148Updated last year
- Convenience Python APIs for antibody numbering using ANARCI☆94Updated 2 months ago
- ☆91Updated 5 months ago
- ☆111Updated 2 weeks ago
- ☆74Updated 3 weeks ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆110Updated 2 weeks ago
- In silico directed evolution of peptide binders with AlphaFold☆153Updated 2 months ago
- Making Protein Modeling Accessible to All Biologists☆102Updated last week
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆95Updated last year
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆105Updated 3 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆114Updated 3 months ago
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆77Updated 2 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆68Updated 5 months ago
- ☆100Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆84Updated last month
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆148Updated last year
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆124Updated 3 years ago
- Official repo of the modular BioExcel version of HADDOCK☆132Updated this week