Alternatives and similar repositories for design_tools

Users that are interested in design_tools are comparing it to the libraries listed below

• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆171Updated 2 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆175Updated 4 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆141Updated 3 years ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆224Updated 6 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆173Updated 4 months ago
• yehlincho / BoltzDesign1
  ☆236Updated last week
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆76Updated last month
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆165Updated 2 months ago
• ikalvet / heme_binder_diffusion
  ☆146Updated 6 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆155Updated 2 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆151Updated 9 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆138Updated 2 months ago
• ELELAB / RosettaDDGPrediction
  ☆84Updated 2 months ago
• levinthal / Pallatom
  ☆133Updated 8 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆198Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆146Updated last month
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆131Updated 2 years ago
• zhanghaicang / carbonmatrix_public
  ☆118Updated last month
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆148Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆133Updated 2 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆89Updated 6 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆179Updated 2 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆114Updated 3 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆238Updated 6 months ago
• Kuhlman-Lab / evopro
  ☆94Updated 3 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆152Updated 2 months ago
• jertubiana / ScanNet
  ☆138Updated 7 months ago
• varun-shanker / structural-evolution
  ☆122Updated last year
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆116Updated 3 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆170Updated 2 years ago