Data analysis of Funannotate and Orthofinder outputs to Pangenome results
☆24May 19, 2020Updated 6 years ago
Alternatives and similar repositories for FunFinder_Pangenome
Users that are interested in FunFinder_Pangenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 2 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 6 months ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆19Apr 1, 2024Updated 2 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- This is a modified version of EDTA☆18Aug 6, 2026Updated last week
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 9 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆73Oct 23, 2025Updated 9 months ago
- High throughput python tool for mining and analysis of gene duplications.☆16Jul 30, 2026Updated 2 weeks ago
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆30Apr 17, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆27Jun 27, 2026Updated last month
- ☆27Jul 26, 2026Updated 2 weeks ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- MCMCtree tutorials☆30May 27, 2024Updated 2 years ago
- I often use some of the self-written programs.☆16Jun 12, 2026Updated 2 months ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆28Aug 23, 2022Updated 3 years ago
- ☆24May 31, 2024Updated 2 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 3 years ago
- Demographic analysis of Brassica oleracea☆10May 19, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆18Nov 26, 2023Updated 2 years ago
- ☆16Jul 25, 2021Updated 5 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- Processing pipeline for pan-genome visulization and exploration☆146Oct 9, 2023Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆31Apr 1, 2025Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆114Jun 12, 2026Updated 2 months ago
- Pipeline for eukaryotic genome annotation based on external evidences☆15Feb 23, 2023Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.☆20Mar 25, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a gap-filling tools of genome in complex region.☆28Dec 30, 2025Updated 7 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆129Feb 13, 2026Updated 6 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆398Updated this week
- Some record about genomes and transcriptomes☆48Dec 29, 2025Updated 7 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 4 months ago