steuernb / AgRenSeqView external linksLinks
☆13Sep 14, 2022Updated 3 years ago
Alternatives and similar repositories for AgRenSeq
Users that are interested in AgRenSeq are comparing it to the libraries listed below
Sorting:
- A R package for Participatory Plant Breeding statisticial analyses☆10Apr 30, 2021Updated 4 years ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- ☆10Jun 13, 2020Updated 5 years ago
- A serious game to teach plant selective breeding.☆10Updated this week
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 2 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 8 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆23May 19, 2020Updated 5 years ago
- A box of genomics tools☆21Aug 26, 2020Updated 5 years ago
- ☆21Sep 22, 2022Updated 3 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Jul 13, 2020Updated 5 years ago
- A repo contains historical and updated MTEC libraries.☆18Feb 6, 2020Updated 6 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 2 months ago
- Efficient merging of structural variants from multiple SV callers and samples☆32Feb 6, 2026Updated last week
- Personal diploid genome creation and coordinate conversion☆30Apr 1, 2025Updated 10 months ago
- ☆16Aug 17, 2023Updated 2 years ago
- blupADC:An useful tool for animal and plant breeding☆32Nov 22, 2024Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago
- ☆28Mar 4, 2022Updated 3 years ago
- ☆28Jan 16, 2024Updated 2 years ago
- NLR-Annotator upload☆76Jul 19, 2023Updated 2 years ago
- Workflow to construct linear representation of pan genome from deep WGS data and public assemblies☆30Oct 31, 2023Updated 2 years ago
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆10Jan 7, 2026Updated last month
- Integrate multiple genome assemblies into a pangenome graph☆35Jun 9, 2022Updated 3 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Sep 13, 2024Updated last year
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- ☆36Apr 13, 2024Updated last year
- Genome Annotation Pipeline☆43Aug 20, 2024Updated last year
- Heritability in plant breeding - R and SAS code examples☆39Feb 27, 2021Updated 4 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 13 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, a…☆10Nov 28, 2023Updated 2 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 6 years ago