☆13Sep 14, 2022Updated 3 years ago
Alternatives and similar repositories for AgRenSeq
Users that are interested in AgRenSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A R package for Participatory Plant Breeding statisticial analyses☆10Apr 30, 2021Updated 5 years ago
- A serious game to teach plant selective breeding.☆13Mar 23, 2026Updated 3 months ago
- ☆10Jun 13, 2020Updated 6 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Unpacking, Interrogating and Subsetting R packages☆42Nov 26, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12May 17, 2022Updated 4 years ago
- A repo contains historical and updated MTEC libraries.☆19May 18, 2026Updated 2 months ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated 2 years ago
- Code and example datasets for Does[0]Compute☆12Dec 2, 2021Updated 4 years ago
- Heritability in plant breeding - R and SAS code examples☆41Feb 27, 2021Updated 5 years ago
- A Helm chart for hosting your own runner on Kubernetes to run jobs in your GitHub Actions workflows. ☸️ 🚀☆53Sep 25, 2020Updated 5 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated last year
- ☆17Nov 26, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 7 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆63Jun 18, 2026Updated last month
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Dec 7, 2018Updated 7 years ago
- expVIP. EXPression and VIsualisation Platform☆17Mar 8, 2023Updated 3 years ago
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- This is a modified version of EDTA☆15Updated this week
- ☆15Jan 19, 2022Updated 4 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- blupADC:An useful tool for animal and plant breeding☆32Nov 22, 2024Updated last year
- Official Repository of the Oyster River Protocol for Transcriptome Assembly☆17Aug 12, 2021Updated 4 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 5 months ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing☆14May 22, 2023Updated 3 years ago
- Filter SAM file for soft and hard clipped alignments☆53Dec 31, 2025Updated 6 months ago
- NLR-Annotator upload☆76Jul 19, 2023Updated 3 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- See https://biometris.github.io/statgenGxE for a full description☆13Nov 12, 2025Updated 8 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 8 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- Integrating Ribo-SEQ Upstream and Downstream Analysis☆12Oct 14, 2024Updated last year
- ☆10Mar 24, 2025Updated last year
- Unleash the full power of your k-mers!☆25Updated this week