irycisBioinfo / PATOLinks
PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
☆59Updated last year
Alternatives and similar repositories for PATO
Users that are interested in PATO are comparing it to the libraries listed below
Sorting:
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- IslandPath standalone software☆33Updated last year
- Bacterial GWAS analysis☆42Updated this week
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- ☆52Updated 2 weeks ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 8 months ago
- whole genome MLST analysis☆45Updated last month
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆29Updated 8 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆73Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- Genome-Genome circle synteny☆25Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Gene Absence Presence Identification tool.☆26Updated 3 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- tiara – a tool for DNA sequence classification☆63Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- ☆25Updated 6 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 3 weeks ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year