Alternatives and similar repositories for CortexCellDeconv:

Users that are interested in CortexCellDeconv are comparing it to the libraries listed below

• MangiolaLaboratory / HPCell
  Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R
  ☆13Updated 4 months ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆21Updated 3 months ago
• AllenInstitute / scrattch.vis
  scRNA-seq data visualization from scrattch
  ☆26Updated 2 weeks ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated 4 months ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆25Updated last year
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆27Updated 3 weeks ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆15Updated 2 years ago
• MarioniLab / scHOT2019
  Instructions and analysis scripts for single cell Higher Order Testing (scHOT)
  ☆9Updated 4 years ago
• hb-gitified / cellrangerRkit
  Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
  ☆19Updated 6 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 3 years ago
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆20Updated 10 months ago
• davemcg / awesome_genome_browsers
  ☆10Updated 6 years ago
• LTLA / TileDBArray
  Clone of the Bioconductor repository for the TileDBArray package.
  ☆10Updated 7 months ago
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 4 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆30Updated 2 years ago
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 4 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 3 years ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 2 years ago
• dynverse / dynwrap
  A common data format and inference environment for single-cell trajectories 📦
  ☆16Updated last year
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated this week
• seandavi / BiocPkgTools
  Computable build reports, package metadata, and download stats from the Bioconductor project
  ☆21Updated last week
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 7 months ago