Alternatives and similar repositories for brainseq_phase2

Users that are interested in brainseq_phase2 are comparing it to the libraries listed below

• hakyimlab / PredictDB_Pipeline_GTEx_v7
  PredictDB Pipeline for GTEx v7 data
  ☆17Updated 3 years ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 3 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆20Updated 2 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆21Updated 5 months ago
• bhattacharya-a-bt / isotwas
  ☆23Updated last week
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆24Updated 5 years ago
• segrelabgenomics / QTLEnrich
  Assessing enrichment of complex disease or trait associations among QTLs
  ☆15Updated 5 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 3 years ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• EMO-Consortium / GeneticCorrelation
  ☆12Updated 2 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• jmw86069 / multienrichjam
  Multi-Enrichment Analysis of Gene Set Enrichment Analysis Results
  ☆25Updated last month
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• single-cell-genetics / limix_qtl
  ☆20Updated 5 months ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆24Updated 4 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆26Updated last year
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆27Updated 2 months ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆42Updated 2 years ago
• gandallab / devBrain_xQTL
  ☆11Updated 8 months ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 4 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• Tuteja-Lab / TissueEnrich
  R package for tissue-specific gene enrichment
  ☆15Updated 3 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆11Updated 3 years ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 2 months ago