R package for normalisation of spatial transcriptomics data
☆21Oct 22, 2026Updated this week
Alternatives and similar repositories for SpaNorm
Users that are interested in SpaNorm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jan 6, 2026Updated 9 months ago
- ☆74May 28, 2025Updated last year
- Benchmarking for gene expression from single cell latent representations☆22Updated this week
- BANKSY: spatial clustering☆168Sep 29, 2026Updated 3 weeks ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CAST package☆43Oct 26, 2024Updated last year
- RIPPLE - Spatial transcriptomics analysis of a cell's influence on its neighbors' transcriptome☆41Sep 14, 2026Updated last month
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆17Updated this week
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Segmentation-free Analysis of In Situ Capture data☆15Oct 7, 2026Updated 2 weeks ago
- ☆36Sep 7, 2026Updated last month
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆41Updated this week
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 11 months ago
- Hierarchical classification of cells☆30Aug 2, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Brings SummarizedExperiment to the tidyverse☆32Updated this week
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- ☆10Oct 31, 2023Updated 2 years ago
- GSEA plots in ggplot2☆10Jan 21, 2024Updated 2 years ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆104Jul 4, 2026Updated 3 months ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆75Jul 9, 2026Updated 3 months ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆20Jun 13, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 5 months ago
- R package for visualization of highly multiplexed imaging data☆37Aug 25, 2026Updated last month
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆163Sep 18, 2026Updated last month
- ☆17Jun 29, 2026Updated 3 months ago
- Single-cell differential expression☆21Updated this week
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆23Jul 19, 2022Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- Helper Functions for LIBD Deconvolution☆11Sep 25, 2026Updated 3 weeks ago
- ☆31Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A quick, free tool for single-cell annotation using large language models☆13Nov 27, 2025Updated 10 months ago
- Single cell omics biology annotations☆63Sep 2, 2026Updated last month
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆134Oct 15, 2026Updated last week
- ☆14Sep 1, 2026Updated last month
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Aug 26, 2026Updated last month
- Interactive design and validation of antibody panels using single-cell atlases | https://cytomarker.ai☆17Oct 8, 2026Updated 2 weeks ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago