jmzeng1314 / cnvView external linksLinks
☆32Dec 6, 2017Updated 8 years ago
Alternatives and similar repositories for cnv
Users that are interested in cnv are comparing it to the libraries listed below
Sorting:
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- ☆24Jun 27, 2017Updated 8 years ago
- ☆10Jul 15, 2016Updated 9 years ago
- ☆12Dec 5, 2018Updated 7 years ago
- ☆10Aug 22, 2018Updated 7 years ago
- ChIP-seq analysis notes from Tommy Tang☆19Jun 28, 2016Updated 9 years ago
- ☆37Jan 1, 2019Updated 7 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 4 years ago
- ☆13Feb 19, 2021Updated 4 years ago
- ☆10Jun 15, 2017Updated 8 years ago
- ☆44Aug 22, 2019Updated 6 years ago
- ☆17Dec 15, 2017Updated 8 years ago
- some short but practical PERL script in NGS data analysis☆16Oct 30, 2017Updated 8 years ago
- ☆47Aug 16, 2019Updated 6 years ago
- ☆16Mar 9, 2019Updated 6 years ago
- ☆160Dec 12, 2017Updated 8 years ago
- ☆95Aug 20, 2019Updated 6 years ago
- It's just a personal record for studying how to analysis TCGA data(expression+mutation+methylation+CNV)☆20Dec 28, 2016Updated 9 years ago
- ☆14Nov 3, 2017Updated 8 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆14Jul 3, 2012Updated 13 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- ☆18Aug 19, 2019Updated 6 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆32Jun 4, 2019Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20May 9, 2019Updated 6 years ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 2 months ago
- automatic update Clinvar db for ANNOVAR☆10Feb 9, 2026Updated last week
- The ProteoCancer Analysis Suite (PCAS) utilizes the CPTAC database to integrate proteomics, phosphoproteomics, and transcriptomics for ca…☆21Jun 18, 2025Updated 7 months ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 5 years ago
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscri…☆13May 26, 2017Updated 8 years ago
- ☆12Mar 5, 2024Updated last year
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 4 months ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 8 years ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Useful Utilities for Statistics and Visualization.☆30Jun 26, 2025Updated 7 months ago
- ☆319Aug 19, 2019Updated 6 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆233Feb 17, 2022Updated 3 years ago