jmzeng1314 / cnv
☆32Updated 7 years ago
Alternatives and similar repositories for cnv:
Users that are interested in cnv are comparing it to the libraries listed below
- ChIP-seq analysis notes from Tommy Tang☆19Updated 8 years ago
- some short but practical PERL script in NGS data analysis☆16Updated 7 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- ☆10Updated 8 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆14Updated 12 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- My own tools code for NGS data analysis (Next Generation Sequencing)☆30Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated 11 months ago
- ☆10Updated 7 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 9 months ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- ☆17Updated 5 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- ☆44Updated 6 years ago
- ☆50Updated 6 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Updated 6 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated 11 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆58Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆70Updated 7 months ago
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Install GISTIC2 by one line code; GISTIC2 docker image☆41Updated 2 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆49Updated 3 months ago