molpopgen / fwdppLinks
fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
☆27Updated 3 years ago
Alternatives and similar repositories for fwdpp
Users that are interested in fwdpp are comparing it to the libraries listed below
Sorting:
- Forward-time simulation in Python using fwdpp☆31Updated 2 weeks ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- ☆23Updated 4 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆87Updated 6 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- ☆20Updated 5 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- A coalescent simulator for genome-scale sequences☆42Updated last year
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- forward-time population genetic simulation in python☆18Updated 8 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 4 months ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- ☆68Updated last year
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Response to blog post about Salmon☆37Updated 8 years ago
- Module for analysing admixture graphs☆28Updated 7 years ago
- ☆36Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆13Updated 2 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Components of genome sequence assembly tools☆21Updated 3 years ago
- Detect recombination hotspots using population genetic data.☆17Updated 5 years ago