Alternatives and similar repositories for fwdpp:

Users that are interested in fwdpp are comparing it to the libraries listed below

• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• mklarqvist / tomahawk
  Fast calculations of linkage-disequilibrium in large-scale human cohorts
  ☆42Updated 5 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated this week
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆50Updated 9 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated 10 months ago
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆46Updated last year
• auton1 / LDhot
  Detect recombination hotspots using population genetic data.
  ☆15Updated 4 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated last year
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆50Updated 4 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 2 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆52Updated 4 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated last year
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• lh3 / samtools
  This is *NOT* the official repository of samtools.
  ☆46Updated 7 years ago
• atifrahman / HAWK
  Hitting associations with k-mers
  ☆46Updated 2 years ago
• popgenmethods / pyrho
  Fast inference of fine-scale recombination rates based on fused-LASSO
  ☆45Updated this week
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• opencb / hpg-variant
  A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
  ☆13Updated 8 years ago
• hopkinsmarinestation / Population-Genomics-via-RNAseq
  Guide to transcriptome assembly & analysis
  ☆21Updated 7 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 6 months ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• scrm / scrm
  A coalescent simulator for genome-scale sequences
  ☆41Updated last year
• kgori / treeCl
  Clustering phylogenetic trees with python
  ☆25Updated 5 months ago
• csiro-crop-informatics / biokanga
  An integrated high performance bioinformatics toolkit
  ☆23Updated 5 years ago
• ANGSD / NgsRelate
  ☆43Updated last year
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated last year
• VGP / vgp-tools
  ☆28Updated last year
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆50Updated 8 years ago