molpopgen / fwdpp
fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
☆27Updated 3 years ago
Alternatives and similar repositories for fwdpp
Users that are interested in fwdpp are comparing it to the libraries listed below
Sorting:
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 4 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- ☆28Updated last month
- Forward-time simulation in Python using fwdpp☆30Updated 2 weeks ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆53Updated 9 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 2 months ago
- ☆22Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- High-level API for storing and querying sequence variant data☆20Updated 5 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Components of genome sequence assembly tools☆21Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 3 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆50Updated last month
- REINDEER REad Index for abuNDancE quERy☆58Updated 9 months ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- Detect recombination hotspots using population genetic data.☆17Updated 4 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 5 years ago