molpopgen / fwdpp
fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
☆27Updated 3 years ago
Alternatives and similar repositories for fwdpp:
Users that are interested in fwdpp are comparing it to the libraries listed below
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆42Updated 5 years ago
- Forward-time simulation in Python using fwdpp☆30Updated 2 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆51Updated 9 years ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆47Updated last month
- ☆68Updated last year
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆46Updated last year
- Lift-over alignments from variant-aware references☆34Updated last year
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆84Updated 3 years ago
- Clustering phylogenetic trees with python☆25Updated 6 months ago
- Automatically exported from code.google.com/p/macs☆16Updated 5 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last week
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- ☆28Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆48Updated 4 months ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆87Updated 5 years ago
- Population genetic simulations in R 🌍☆56Updated this week
- Fast & accurate alignment of barcoded short-reads☆33Updated last year
- Guide to transcriptome assembly & analysis☆21Updated 7 years ago
- ☆20Updated 4 years ago
- ☆19Updated 4 months ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 4 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated 11 months ago
- ✏️ Genome assembly polishing & SNV detection☆66Updated this week
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year