Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying"
☆33Mar 15, 2025Updated last year
Alternatives and similar repositories for atlas-feature-selection-benchmark
Users that are interested in atlas-feature-selection-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 5, 2025Updated last year
- ☆19May 30, 2022Updated 4 years ago
- CellRank 2's reproducibility repository.☆16Sep 4, 2024Updated last year
- ☆38Sep 20, 2022Updated 3 years ago
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆33Aug 22, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NeST-VNN repo☆12Jun 13, 2025Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆35Jul 23, 2026Updated 3 weeks ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- ☆13Sep 3, 2025Updated 11 months ago
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆22Mar 24, 2026Updated 4 months ago
- Analysis pipeline used to benchmark scRNA-seq copy number variant callers☆17May 17, 2026Updated 2 months ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 4 months ago
- The single T cell annotation tool for scRNA-seq data☆28Apr 25, 2025Updated last year
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆33Jul 27, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Mar 13, 2026Updated 5 months ago
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- ☆35Jun 11, 2026Updated 2 months ago
- Software for in silico evolution - Paul François' group McGill University☆10Mar 16, 2022Updated 4 years ago
- ☆25Jun 6, 2025Updated last year
- ☆38Jun 4, 2024Updated 2 years ago
- R Shiny wrapper for Gosling.js - Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization☆18Apr 22, 2026Updated 3 months ago
- CellPolaris☆14Jan 11, 2026Updated 7 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A ggplot2 based biplot for principal components-like methods☆16Aug 4, 2026Updated last week
- Bayesian network modelling of mutational interactions identifies novel cancer subgroups☆15May 10, 2021Updated 5 years ago
- Data-driven signal detection for unbiased scRNA-seq data analysis☆24Jan 22, 2026Updated 6 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆78Feb 24, 2025Updated last year
- ☆104May 4, 2026Updated 3 months ago
- ☆22Mar 6, 2023Updated 3 years ago
- Easy single cell analysis platform for enrichment☆229Aug 9, 2026Updated last week
- 📈A 'ggplot2' Extension for Visualizing Density, Distribution, Hazard, or Survival Functions using the 'logspline' Package☆12Jun 18, 2019Updated 7 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Diffusion model for gene regulatory network inference.☆30Jul 19, 2026Updated 3 weeks ago
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆97Updated this week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- An LLM skill for modern tidyverse R using R >= 4.5.0, tidyverse >= 2.0.0, and dplyr >= 1.2.0.☆21Jun 8, 2026Updated 2 months ago
- Source files for my personal website, built using Quarto and deployed with Netlify☆16Aug 9, 2026Updated last week