Mutation tracker for microbial genomes
☆14Sep 30, 2020Updated 5 years ago
Alternatives and similar repositories for MicroGMT
Users that are interested in MicroGMT are comparing it to the libraries listed below
Sorting:
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 5 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- ☆21Feb 12, 2026Updated 3 weeks ago
- genome sized sequences clustering☆17Dec 29, 2020Updated 5 years ago
- finding conserved regions in highly diverse genomes☆16Jun 1, 2025Updated 9 months ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 2 years ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆23Mar 29, 2021Updated 4 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- SPRINT: Scoring PRotein INTeractions☆16Aug 11, 2020Updated 5 years ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- A pipeline for viral identification from metagenomic samples☆27Oct 15, 2017Updated 8 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated last week
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 7 months ago
- 用每个窗口的read数作为特征、胎儿浓度作为标签,训练神经网络模型;训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 3 years ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- The is a repository containing MATLAB and Python code used in teaching graduate students in neuroscience.☆13Jan 20, 2022Updated 4 years ago
- Collected scripts for Pymol☆10Mar 18, 2015Updated 10 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 4 months ago
- The DNAnexus incremental upload script packaged as an Ansible Role☆13Apr 7, 2025Updated 10 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- ☆15Jun 29, 2015Updated 10 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated last week
- Labs from An Introduction to Statistical Learning☆10Apr 17, 2018Updated 7 years ago
- Data cleaning and exploration in Pandas via Jupyter notebook☆10Jun 17, 2019Updated 6 years ago
- ☆13Dec 3, 2024Updated last year
- Example iOS app using the open-source combustion-ios-ble framework.☆11Aug 2, 2023Updated 2 years ago
- A fast, user-friendly package for self-organizing maps☆12May 15, 2025Updated 9 months ago
- Used by git2r, openssl☆10Jul 14, 2023Updated 2 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- ☆11Jun 15, 2019Updated 6 years ago
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 3 years ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- pymol implementation of WaterDock with Akshay Sridhar (@akshay-sridhar) and refactoring work by Patrick McCubbin (@mccubbinp)☆11Mar 25, 2024Updated last year
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 4 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago