Alternatives and similar repositories for MicroGMT

Users that are interested in MicroGMT are comparing it to the libraries listed below

• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated 2 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• sequana / rnaseq
  RNA-seq, QC and differential analysis pipeline
  ☆17Updated 2 months ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• abadona / qsimscan
  Automatically exported from code.google.com/p/qsimscan
  ☆14Updated 4 years ago
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆23Updated last week
• CBC-UCONN / Genome_Assembly
  ☆24Updated 9 months ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 3 months ago
• nygenome / taxmaps
  Ultra-efficient taxonomic mapping of NGS data
  ☆51Updated 4 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆24Updated 4 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 4 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 6 years ago
• hallamlab / LAST-Plus
  Parallel implementation of the LAST aligner
  ☆18Updated 9 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• mocat2 / mocat2
  Latest MOCAT2 version
  ☆18Updated 4 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• DormanLab / AmpliCI
  AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
  ☆24Updated 2 months ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆30Updated 7 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆17Updated last year
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• tdseher / simple-codon-optimizer
  Simple Python program to perform codon optimization or heterology calculations.
  ☆11Updated 4 years ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆13Updated 6 months ago
• hivdb / codfreq
  FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
  ☆14Updated 5 months ago
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated last week
• stjude / PrimerTK
  A toolkit to design standard primers, multiplexed primers, and primers around SV's
  ☆13Updated 3 years ago
• signalbash / borf
  ORF prediction using python
  ☆12Updated 4 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆18Updated 2 months ago