qunfengdong / MicroGMTLinks
Mutation tracker for microbial genomes
☆14Updated 5 years ago
Alternatives and similar repositories for MicroGMT
Users that are interested in MicroGMT are comparing it to the libraries listed below
Sorting:
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Automatically exported from code.google.com/p/qsimscan☆13Updated 4 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- An RNA virus strain-level identification tool for short reads.☆23Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated 5 months ago
- ☆24Updated 8 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 10 months ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- RNA-seq, QC and differential analysis pipeline☆17Updated last month
- pathway based data integration and visualization☆43Updated 9 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 5 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated last month
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Updated 2 years ago
- Parallel implementation of the LAST aligner☆18Updated 9 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆10Updated 13 years ago
- Nanopore Real-Time Analysis Tool☆16Updated last year
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago