qunfengdong / MicroGMTLinks
Mutation tracker for microbial genomes
☆14Updated 5 years ago
Alternatives and similar repositories for MicroGMT
Users that are interested in MicroGMT are comparing it to the libraries listed below
Sorting:
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆36Updated last year
- full taxonomer cython repository☆22Updated 5 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 5 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 5 months ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 6 years ago
- ☆26Updated 5 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated this week
- Parallel implementation of the LAST aligner☆18Updated 8 years ago
- An RNA virus strain-level identification tool for short reads.☆22Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 2 months ago
- ☆45Updated 8 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 10 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- RNA-seq, QC and differential analysis pipeline☆17Updated last month
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Updated 3 years ago
- ☆24Updated 6 months ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Master of Pores 2☆23Updated 11 months ago