Alternatives and similar repositories for MicroGMT

Users that are interested in MicroGMT are comparing it to the libraries listed below

• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated last year
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆22Updated last year
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆30Updated 7 years ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 6 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 4 years ago
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆20Updated 10 months ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 7 months ago
• nygenome / taxmaps
  Ultra-efficient taxonomic mapping of NGS data
  ☆51Updated 4 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• mocat2 / mocat2
  Latest MOCAT2 version
  ☆18Updated 4 years ago
• EnvGen / DEGEPRIME
  A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies
  ☆32Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated last month
• sequana / rnaseq
  RNA-seq, QC and differential analysis pipeline
  ☆17Updated 3 weeks ago
• abadona / qsimscan
  Automatically exported from code.google.com/p/qsimscan
  ☆13Updated 4 years ago
• CBC-UCONN / Genome_Assembly
  ☆24Updated 8 months ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆13Updated 5 months ago
• hallamlab / LAST-Plus
  Parallel implementation of the LAST aligner
  ☆18Updated 9 years ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 2 weeks ago
• atifrahman / HAWK
  Hitting associations with k-mers
  ☆44Updated 3 years ago
• rpetit3 / vcf-annotator
  Add biological annotations to variants in a given VCF file.
  ☆32Updated 4 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆24Updated 4 years ago
• algo-cancer / CAMMiQ
  Metagenomics microbial abundance quantification
  ☆28Updated 3 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago