jsschrepping / r_docker
Docker container for genomics analyses in R.
β24Updated 9 months ago
Alternatives and similar repositories for r_docker:
Users that are interested in r_docker are comparing it to the libraries listed below
- β36Updated 2 years ago
- Scripts to install as a Bioconda package for making workflowsβ18Updated 5 months ago
- 𧬠Gene analysis toolkit based on Rβ55Updated last month
- β29Updated 3 weeks ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.β16Updated 3 years ago
- scRNA multimodal analysis pipeline utilised for large dataset processingβ14Updated 3 weeks ago
- β20Updated last year
- β26Updated last year
- Tutorial for AMSI BioInfoSummer 2018β29Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paperβ23Updated 2 years ago
- β29Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datβ¦β15Updated 6 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq dataβ36Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cellβ24Updated 8 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ceβ¦β27Updated last year
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cellsβ16Updated 6 months ago
- Analysis of single cell RNA-Seq data from Veres et al.β12Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"β53Updated 4 years ago
- β15Updated 2 years ago
- Workshop β’ Analysis of RNA-seq dataβ35Updated 11 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modificationsβ31Updated 2 years ago
- Merge fastq files split over lanesβ20Updated 7 years ago
- An R package to analyze single-cell V(D)J dataβ24Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSFβ35Updated 6 years ago
- ATAC-seq Quality Controlβ22Updated last month
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic β¦β33Updated 3 months ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq dataβ31Updated 5 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed modelsβ21Updated 3 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.β56Updated 11 months ago
- R/Bioconductor package for working with 10x scATACseq dataβ38Updated last year