Docker container for genomics analyses in R.
☆28Apr 29, 2024Updated 2 years ago
Alternatives and similar repositories for r_docker
Users that are interested in r_docker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Template for DESeq2 Analysis of RNA-seq data☆17Mar 29, 2019Updated 7 years ago
- ☆16Feb 17, 2025Updated last year
- ☆17Sep 28, 2022Updated 3 years ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Apr 29, 2026Updated last month
- DistMap☆14Nov 23, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated last year
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- Tools for Unmixing Spectral Flow Cytometry Data☆34Updated this week
- Data Wrangling and Processing for Genomics☆75Updated this week
- Introduction to the Command Line for Genomics☆70Updated this week
- The official documentation from Peter Langfelder and Steve Horvath. I am only reuploading it as it is not anymore available and I do not …☆23Jul 24, 2024Updated last year
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 3 months ago
- The blog of tidyomics☆13Jul 12, 2025Updated 11 months ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆35Updated this week
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21Updated this week
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆40Mar 20, 2026Updated 2 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 6 months ago
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Jul 21, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Nov 9, 2022Updated 3 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 4 years ago
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆41Aug 23, 2023Updated 2 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 10 months ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆24Apr 24, 2026Updated last month
- ☆17Mar 12, 2021Updated 5 years ago
- Finding gene expression states in scRNA-seq data☆51Mar 22, 2024Updated 2 years ago
- ☆11May 14, 2025Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆52Dec 10, 2025Updated 6 months ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago