jsschrepping / r_dockerLinks
Docker container for genomics analyses in R.
☆26Updated last year
Alternatives and similar repositories for r_docker
Users that are interested in r_docker are comparing it to the libraries listed below
Sorting:
- ☆41Updated 3 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated last year
- binned motif enrichment analysis and visualisation☆44Updated 2 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- scRNA-seq Shiny App☆14Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆23Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Peak caller for CUT&TAG data☆30Updated 3 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- workshop website on readthedocs☆21Updated 3 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆38Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆29Updated 2 years ago
- ☆23Updated last year
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- An R interface to the MEME Suite☆54Updated last week
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Updated 6 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Updated 4 years ago
- ☆20Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 7 years ago
- ☆23Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 8 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Detecting intron retention from RNA-Seq experiments☆55Updated last year