Docker container for genomics analyses in R.
☆28Apr 29, 2024Updated 2 years ago
Alternatives and similar repositories for r_docker
Users that are interested in r_docker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Template for DESeq2 Analysis of RNA-seq data☆17Mar 29, 2019Updated 7 years ago
- ☆17Sep 28, 2022Updated 4 years ago
- ☆11May 19, 2020Updated 6 years ago
- ☆16Feb 17, 2025Updated last year
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 7 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- DistMap☆15Nov 23, 2021Updated 4 years ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Apr 29, 2026Updated 5 months ago
- ☆18Mar 12, 2021Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆42Aug 23, 2023Updated 3 years ago
- Single-cell Hi-C & RNA analysis☆11Nov 20, 2024Updated last year
- FastPCA using PRIMME☆10Dec 16, 2020Updated 5 years ago
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- Model-based Analysis of Protein Degradability☆12Aug 30, 2021Updated 5 years ago
- Introduction to the Command Line for Genomics☆71Updated this week
- Finding gene expression states in scRNA-seq data☆58Mar 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- Data Wrangling and Processing for Genomics☆78Oct 13, 2026Updated last week
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Apr 14, 2023Updated 3 years ago
- ☆65Mar 18, 2025Updated last year
- Implementation of Seurat's SpatialFeaturePlot to allow blended expression☆11Feb 28, 2025Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆38Jul 5, 2021Updated 5 years ago
- The blog of tidyomics☆13Jul 12, 2025Updated last year
- A collection of resources for learning about tools and programming languages related to Bioinformatics☆201Jul 20, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Using R and Bioconductor packages for the analysis and comprehension of proteomics data.☆106Jul 23, 2026Updated 2 months ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 6 months ago
- lecture notes for 1 credit Data Wrangling in R class☆16Jan 21, 2021Updated 5 years ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆36Oct 9, 2026Updated 2 weeks ago
- minimal example implementations for bioinformatics workflow managers☆294Oct 27, 2021Updated 4 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 3 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago