jsschrepping / r_dockerLinks
Docker container for genomics analyses in R.
☆24Updated last year
Alternatives and similar repositories for r_docker
Users that are interested in r_docker are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- ☆31Updated 4 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 8 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- ☆20Updated last year
- workshop website on readthedocs☆19Updated last month
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆29Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 2 weeks ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- binned motif enrichment analysis and visualisation☆40Updated last month
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆18Updated last week
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆12Updated 5 years ago
- ☆14Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆20Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- ☆49Updated 10 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆16Updated 10 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆23Updated last month
- ☆39Updated 3 years ago