Alternatives and similar repositories for GalaxyKickStart

Users that are interested in GalaxyKickStart are comparing it to the libraries listed below

• SGBC / galaksio
  An easy-to-use way for running Galaxy workflows.
  ☆20Updated 5 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 10 months ago
• goeckslab / isoseq-browser
  ☆13Updated 8 years ago
• galaxyproject / admin-training
  Galaxy Admin Training
  ☆60Updated last week
• LUMC / galaxy-launcher
  A project to launch the galaxy docker image easily using ansible
  ☆11Updated 5 years ago
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated last month
• alexcoppe / bio-dockers
  Bio-dockers: dockerized bioinformatic tools
  ☆32Updated 2 months ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 2 months ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• pcingola / SnpSift
  ☆38Updated 8 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆15Updated 3 weeks ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆63Updated 3 years ago
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆47Updated 6 years ago
• gedoardo83 / GARFIELD-NGS
  GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS
  ☆17Updated 6 years ago
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆33Updated this week
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆51Updated 10 months ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• tiagoantao / pygenomics
  A library for next generation genomics in Python 3
  ☆18Updated 7 years ago
• bihealth / digestiflow-server
  Web-based database system for flow cell management (incl. REST API)
  ☆15Updated last year
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 6 years ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆38Updated last week
• Ensembl / ensembl-tools
  Ensembl tools
  ☆35Updated 6 months ago
• drio / bio.brew
  A tiny package manager for crucial unix and bioinformatics tools
  ☆27Updated 10 years ago
• gatk-workflows / gatk4-jupyter-notebook-tutorials
  This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
  ☆26Updated 5 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• broadinstitute / vim-wdl
  Vim syntax highlighting for WDL
  ☆20Updated 4 years ago