Alternatives and similar repositories for workshop-reproducible-research

Users that are interested in workshop-reproducible-research are comparing it to the libraries listed below

• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 5 years ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆120Updated 2 months ago
• quinlan-lab / sllobs-biostats
  ☆73Updated 3 years ago
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆49Updated last year
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆55Updated 2 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆106Updated last week
• melbournebioinformatics / melbournebioinformatics.github.io
  Melbourne Bioinformatics documentation in markdown format
  ☆120Updated last week
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆120Updated 3 weeks ago
• Huber-group-EMBL / biomaRt
  R package providing query functionality to BioMart instances like Ensembl
  ☆43Updated last month
• asntech / intervene
  Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
  ☆143Updated 2 years ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆91Updated 4 months ago
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆82Updated 3 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆67Updated last year
• hbctraining / Intro-to-variant-analysis
  ☆34Updated 7 months ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆86Updated 2 weeks ago
• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆117Updated last year
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆88Updated 11 months ago
• hbctraining / main
  ☆56Updated last week
• raynamharris / Shell_Intro_for_Bioinformatics_STG
  Intro to Shell for Bioinformatics - with STG examples
  ☆28Updated 9 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆54Updated 6 months ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 2 months ago
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆52Updated 2 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated 6 months ago
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated last week
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆134Updated last year
• sib-swiss / NGS-longreads-training
  ☆13Updated 10 months ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆71Updated 3 weeks ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆163Updated last year
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆72Updated 2 months ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆126Updated 3 months ago