NBISweden / workshop-reproducible-researchLinks
NBIS/Elixir course: Tools for Reproducible Research
☆64Updated last week
Alternatives and similar repositories for workshop-reproducible-research
Users that are interested in workshop-reproducible-research are comparing it to the libraries listed below
Sorting:
- ☆72Updated 3 years ago
- A template for standard compliant snakemake-workflows☆111Updated 3 weeks ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆103Updated this week
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆56Updated 2 years ago
- ☆12Updated 6 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 3 weeks ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Updated 6 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆102Updated 3 weeks ago
- A short tutorial on getting started with Snakemake for workflow management☆53Updated 6 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 3 weeks ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆55Updated 2 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆81Updated 3 weeks ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆67Updated 2 weeks ago
- ☆33Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Example genomics data for tool developers☆116Updated last year
- ☆50Updated 4 years ago
- An interactive web-tool for RNA-seq analysis☆68Updated 6 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆72Updated 5 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆87Updated 7 months ago
- ☆21Updated 11 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 3 months ago
- Tips for Nextflow and cheatsheet for channel operation☆78Updated last year
- Visualizing transcript structure and annotation using ggplot2☆158Updated last year
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated 2 years ago