EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
☆55May 25, 2023Updated 2 years ago
Alternatives and similar repositories for preNivolumabOnNivolumab
Users that are interested in preNivolumabOnNivolumab are comparing it to the libraries listed below
Sorting:
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 2 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆16Nov 14, 2022Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Dec 4, 2018Updated 7 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 2 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆14Feb 17, 2026Updated last month
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Aug 13, 2020Updated 5 years ago
- Personal notes about work- and coding-related topics☆21Mar 22, 2023Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- ☆21Dec 26, 2025Updated 2 months ago
- My dotfiles, with simple install script.☆54Mar 2, 2026Updated 2 weeks ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Oct 25, 2024Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Introduction to Computational Biology - source Rmarkdown files☆66Oct 28, 2024Updated last year
- scRNAseq analysis notes from Ming Tang☆786Dec 2, 2024Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆18Mar 7, 2024Updated 2 years ago
- ☆20Nov 17, 2025Updated 4 months ago
- Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023☆523Jan 14, 2026Updated 2 months ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆16Feb 1, 2021Updated 5 years ago
- Materials for my scikit-learn tutorial☆12Nov 19, 2025Updated 4 months ago
- ☆19Jan 24, 2025Updated last year
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 6 years ago
- 2018 Bioconductor Workshops☆76May 15, 2019Updated 6 years ago
- A Transcriptomics-Proteomics Integration Pipeline☆18Apr 11, 2024Updated last year
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 3 months ago
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- ☆62Jul 6, 2021Updated 4 years ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Nov 9, 2024Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Oct 11, 2025Updated 5 months ago
- A simple gene co-expression analyses workflow powered by tidyverse and graph analyses☆213Sep 3, 2025Updated 6 months ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- Turn an existing conda environment into a Singularity container☆82Dec 14, 2022Updated 3 years ago