stephenturner / adaptersLinks
Adapters for trimming
☆30Updated 6 years ago
Alternatives and similar repositories for adapters
Users that are interested in adapters are comparing it to the libraries listed below
Sorting:
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last month
- Evolutionary Transcriptomics with R☆44Updated last week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A collection of command line tools for working with sequencing data☆51Updated 3 weeks ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆18Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- ☆51Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 3 months ago
- Structural variant caller☆54Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Updated 9 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago