ToolsVanBox / PTATOLinks
PTa Analysis TOolkit
☆14Updated last month
Alternatives and similar repositories for PTATO
Users that are interested in PTATO are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆36Updated 2 weeks ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- ☆29Updated last year
- ☆36Updated 4 years ago
- ☆23Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- ☆18Updated this week
- ☆12Updated 7 years ago
- Explore and download data from the recount3 project☆37Updated 4 months ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Documents used for workshops on single cell analysis☆27Updated 9 years ago
- ☆22Updated 4 months ago
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆42Updated 2 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Multi-omics data normalisation, model fitting and visualisation.☆27Updated 2 years ago
- ☆23Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- A single cell sequencing read simulator.☆34Updated last year
- VirusScan Pipeline☆11Updated last week
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 3 years ago
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆26Updated 9 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year