PTa Analysis TOolkit
☆16May 12, 2026Updated last week
Alternatives and similar repositories for PTATO
Users that are interested in PTATO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆19Jul 28, 2025Updated 9 months ago
- ☆10Oct 9, 2017Updated 8 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆11May 12, 2025Updated last year
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Apr 4, 2023Updated 3 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 3 months ago
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆30Feb 16, 2026Updated 3 months ago
- Code and examples for optical pooled screens (updated protocol).☆14Jan 28, 2024Updated 2 years ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Latex templates for submitting the NIH F31 grant☆16Sep 18, 2019Updated 6 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆13Jan 27, 2023Updated 3 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆18Feb 25, 2022Updated 4 years ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 2 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14May 8, 2026Updated last week
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24May 11, 2026Updated last week
- ☆25Apr 7, 2026Updated last month
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 5 months ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26May 4, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 3 years ago
- Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data☆33Updated this week
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- Analysis software for Nanorate Sequencing (NanoSeq) experiments☆32Dec 16, 2025Updated 5 months ago
- ☆20Feb 24, 2017Updated 9 years ago
- UKbiobank basic tutoria☆38Oct 29, 2025Updated 6 months ago
- repository containing analysis scripts and auxiliary files☆38Apr 9, 2020Updated 6 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆21Apr 20, 2025Updated last year
- NBIS/Elixir course: Tools for Reproducible Research☆69Apr 26, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆27Jul 30, 2022Updated 3 years ago
- R scripts and executable binder for blog post about using Purrr for mapping over ML hyperparameters☆11May 15, 2019Updated 7 years ago
- ☆24Feb 2, 2025Updated last year
- distance based phylogenetic placement☆28Feb 28, 2024Updated 2 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- ☆12Jun 29, 2018Updated 7 years ago
- OpenMediaVault plugin to help setup machine for development☆10Mar 21, 2026Updated last month