PTa Analysis TOolkit
☆20Jun 9, 2026Updated 3 months ago
Alternatives and similar repositories for PTATO
Users that are interested in PTATO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆23Jul 28, 2025Updated last year
- ☆10Oct 9, 2017Updated 8 years ago
- Analysis software for Nanorate Sequencing (NanoSeq) experiments☆36Updated this week
- ☆14Apr 4, 2023Updated 3 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Latex templates for submitting the NIH F31 grant☆17Sep 18, 2019Updated 7 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 7 months ago
- Code and examples for optical pooled screens (updated protocol).☆15Jan 28, 2024Updated 2 years ago
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆32Feb 16, 2026Updated 7 months ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- ☆18Feb 25, 2022Updated 4 years ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 3 years ago
- Navigation links (and brief descriptions) to my repositories.☆14Nov 25, 2025Updated 9 months ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆15Jun 18, 2026Updated 3 months ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆25Updated this week
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26Jul 27, 2026Updated last month
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- NBIS/Elixir course: Tools for Reproducible Research☆69Updated this week
- Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data☆38Sep 1, 2026Updated 2 weeks ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆39Apr 9, 2020Updated 6 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆27Jul 30, 2022Updated 4 years ago
- ☆20Feb 24, 2017Updated 9 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆26Sep 9, 2026Updated last week
- ☆26Feb 2, 2025Updated last year
- distance based phylogenetic placement☆28Feb 28, 2024Updated 2 years ago
- R scripts and executable binder for blog post about using Purrr for mapping over ML hyperparameters☆11May 15, 2019Updated 7 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 4 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆14Aug 4, 2026Updated last month
- OpenMediaVault plugin to help setup machine for development☆10Jun 4, 2026Updated 3 months ago