Alternatives and similar repositories for bioinformatics-pipeline-tutorial

Users that are interested in bioinformatics-pipeline-tutorial are comparing it to the libraries listed below

• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆73Updated this week
• gexijin / idepGolem
  ☆43Updated last month
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆50Updated 3 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• hbctraining / main
  ☆57Updated last week
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆45Updated 2 months ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆58Updated 7 years ago
• Huber-group-EMBL / biomaRt
  R package providing query functionality to BioMart instances like Ensembl
  ☆44Updated 2 weeks ago
• andrewrech / antigen.garnish
  ☆48Updated 3 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆54Updated 3 weeks ago
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated 2 years ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 7 months ago
• vib-tcp / nextflow-workshop
  Nextflow workshop materials November 2024
  ☆18Updated last month
• sib-swiss / RNAseq-introduction-training
  Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
  ☆16Updated 4 months ago
• dohlee / snakemake-wrappers
  Snakemake wrappers for bioinformatics.
  ☆18Updated 2 years ago
• gladstone-institutes / Interactive-Enrichment-Analysis
  A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
  ☆31Updated 2 weeks ago
• asntech / pyjaspar
  pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
  ☆34Updated 3 months ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆126Updated 4 months ago
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆46Updated last year
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆32Updated 5 years ago
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated this week
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆96Updated last year
• sbooeshaghi / single-cell-vocabulary
  ☆25Updated last year
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• BUStools / bustools
  Tools for working with BUS files
  ☆102Updated 8 months ago
• crazyhottommy / machine-learning-resource
  ☆87Updated last year
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆80Updated last month
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆49Updated last year
• dariober / bioinformatics-cafe
  Unsorted scripts for bioinformatics
  ☆61Updated 4 years ago