Alternatives and similar repositories for bioinformatics-pipeline-tutorial

Users that are interested in bioinformatics-pipeline-tutorial are comparing it to the libraries listed below

• nf-core / scdownstream
  A single cell transcriptomics pipeline for QC, integration and making the data presentable
  ☆70Updated 2 weeks ago
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆44Updated 3 months ago
• gexijin / idepGolem
  ☆41Updated this week
• daisybio / NEASE
  A network-based approach for exon set enrichment
  ☆15Updated last month
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆32Updated 5 years ago
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆96Updated last year
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated last year
• epigen / atacseq_pipeline
  Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
  ☆59Updated 2 weeks ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• PierreBSC / Viral-Track
  ☆61Updated 5 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 7 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆48Updated 2 years ago
• francescojm / CRISPRcleanR
  Unsupervised correction of gene independent cell responses to CRISPR-cas9
  ☆50Updated 2 years ago
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆74Updated 4 months ago
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆76Updated last month
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆57Updated 7 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆121Updated this week
• hbctraining / main
  ☆55Updated last week
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆42Updated last week
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 2 months ago
• BUStools / bustools
  Tools for working with BUS files
  ☆101Updated 3 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• sbooeshaghi / single-cell-vocabulary
  ☆26Updated last year
• andrewrech / antigen.garnish
  ☆49Updated 3 years ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆56Updated 7 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆53Updated last month