ricomnl / bioinformatics-pipeline-tutorialLinks
A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.
☆16Updated 2 years ago
Alternatives and similar repositories for bioinformatics-pipeline-tutorial
Users that are interested in bioinformatics-pipeline-tutorial are comparing it to the libraries listed below
Sorting:
- Visual exploratory analysis of gene expression data☆43Updated last month
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆78Updated 2 weeks ago
- ☆41Updated this week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆49Updated 2 years ago
- published papers with a lot of data☆74Updated 6 months ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆67Updated last week
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- A network-based approach for exon set enrichment☆15Updated 3 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆61Updated 4 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Workflow for single-cell RNA-seq analysis using Seurat☆45Updated last year
- ☆56Updated last week
- My youtube programming scripts☆58Updated 9 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- ☆27Updated 2 years ago
- Workshop • Analysis of RNA-seq data☆36Updated last year
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆52Updated 2 years ago
- ☆25Updated last year
- ☆49Updated 3 years ago
- A rust framework to make using alevin-fry even simpler☆58Updated 6 months ago
- An R interface to the MEME Suite☆53Updated 4 months ago
- Builds a PEP from SRA or GEO accessions☆53Updated 3 months ago
- ☆62Updated 5 years ago
- ☆22Updated 4 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 weeks ago
- Nextflow workshop materials November 2024☆16Updated 6 months ago