NPLinker / nplinker
A python framework for microbial natural products data mining by integrating genomics and metabolomics data
☆18Updated 2 weeks ago
Alternatives and similar repositories for nplinker:
Users that are interested in nplinker are comparing it to the libraries listed below
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆25Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆24Updated this week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆39Updated last month
- Discovery of conserved gene clusters in multiple genomes☆59Updated 2 weeks ago
- ☆17Updated 8 months ago
- Software for predicting translation initiation rates in bacteria☆21Updated 3 months ago
- ☆11Updated 2 months ago
- ☆19Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated last month
- Protein structure alignment and search algorithm☆51Updated this week
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year
- ☆20Updated 4 years ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆30Updated last week
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆13Updated last month
- ☆15Updated 11 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last week
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Supplementary data for co-occurrence manuscript☆10Updated 5 years ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated last year
- ☆12Updated 3 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 11 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆19Updated last year
- antimicrobial peptide prediction in R☆27Updated 2 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated 11 months ago
- metabolic heatmap☆19Updated 5 years ago
- UniProt Id Mapping through API☆31Updated 4 months ago