NPLinker / nplinker
A python framework for data mining microbial natural products by integrating genomics and metabolomics data
☆17Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for nplinker
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆20Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆24Updated 7 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- ☆18Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆25Updated last year
- Discovery of conserved gene clusters in multiple genomes☆55Updated this week
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆29Updated 3 weeks ago
- ☆14Updated 7 months ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆13Updated 2 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆28Updated this week
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Protein structure alignment and search algorithm☆33Updated this week
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- ☆10Updated 3 years ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆35Updated 7 months ago
- ☆18Updated 3 years ago
- Software for predicting translation initiation rates in bacteria☆18Updated last week
- ☆35Updated this week
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆13Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆14Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆29Updated 8 months ago
- Supplementary data for co-occurrence manuscript☆10Updated 4 years ago
- PaperBLAST: find papers about a protein or its homologs☆35Updated this week
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆14Updated last month
- antimicrobial peptide prediction in R☆27Updated last year
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆19Updated 2 years ago