Python Scientific Pipeline Management System
☆71May 17, 2023Updated 2 years ago
Alternatives and similar repositories for COSMOS2
Users that are interested in COSMOS2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This Is Indian Country - Spring 2018 Instance☆12Apr 30, 2018Updated 8 years ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- ☆14Mar 13, 2018Updated 8 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Sep 17, 2019Updated 6 years ago
- An accelerated framework for manipulating and interpreting high-throughput sequencing data☆26Jul 9, 2013Updated 12 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 3 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- python access to UCSC genomes database☆136Aug 27, 2020Updated 5 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Dec 28, 2020Updated 5 years ago
- The integrated pipeline for Indel detection☆17Apr 29, 2018Updated 8 years ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Apr 13, 2026Updated 3 weeks ago
- ChromoZoom is a fast, fluid web-based genome browser☆48Mar 15, 2021Updated 5 years ago
- R/Shiny application for viewing microbial community data☆19Dec 17, 2020Updated 5 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆248Oct 18, 2024Updated last year
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Apr 15, 2026Updated 2 weeks ago
- for detecting internal tandem duplication from genome sequence data.☆12May 16, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated last week
- TOPMed Freeze 3 variant calling pipeline☆10Dec 5, 2018Updated 7 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆272May 5, 2023Updated 2 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- Playing with the API for ClinicalTrials.gov and LillyCOI☆14Jul 28, 2014Updated 11 years ago
- Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford☆68Jan 9, 2022Updated 4 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated 10 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 2 weeks ago
- Website to analyze conflicting assertions in ClinVar☆19Mar 16, 2026Updated last month
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year