genome / somatic-sniper
A tool to call somatic single nucleotide variants.
☆41Updated 9 years ago
Alternatives and similar repositories for somatic-sniper:
Users that are interested in somatic-sniper are comparing it to the libraries listed below
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆46Updated 5 years ago
- identifying mutational significance in cancer genomes☆60Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆51Updated 7 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ☆68Updated 2 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Read visualizer for structural variants☆81Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Kourami: Graph-guided assembly for HLA alleles☆37Updated 5 years ago
- Assembly Based ReAligner☆72Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆57Updated 4 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆44Updated 10 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago