genome / somatic-sniperLinks
A tool to call somatic single nucleotide variants.
☆41Updated 10 years ago
Alternatives and similar repositories for somatic-sniper
Users that are interested in somatic-sniper are comparing it to the libraries listed below
Sorting:
- ☆69Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 10 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- ☆46Updated 5 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Tumor Mutational Burden☆61Updated last month
- Multi-sample somatic variant caller☆52Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 8 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- FusionInspector code☆58Updated 2 weeks ago
- Somatic copy variant caller (CNV) for next generation sequencing☆74Updated 11 months ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- ☆57Updated 5 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago