Various algorithms for analysing genomics data
☆292Sep 25, 2026Updated this week
Alternatives and similar repositories for hmftools
Users that are interested in hmftools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28Sep 11, 2026Updated 2 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- Filter and prioritize fusion calls☆21May 26, 2026Updated 4 months ago
- ☆81Jul 12, 2023Updated 3 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆122Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- ☆13Apr 16, 2026Updated 5 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 3 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆99Aug 1, 2024Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- Tools for processing and analyzing structural variants.☆158May 2, 2022Updated 4 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆240Aug 25, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and accurate gene fusion detection from RNA-Seq data☆278Sep 21, 2025Updated last year
- SV clustering☆32Jul 5, 2021Updated 5 years ago
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Feb 20, 2020Updated 6 years ago
- Codes and Data for FFPEsig manuscript☆16Jan 17, 2024Updated 2 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆165Jun 18, 2024Updated 2 years ago
- Structural variant toolkit for VCFs☆423Sep 19, 2026Updated last week
- ☆49Jan 7, 2025Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆150Feb 19, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆179Jun 8, 2026Updated 3 months ago
- Personal Cancer Genome Reporter (PCGR)☆285Sep 20, 2026Updated last week
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆122Updated this week
- ASCAT R package☆204Feb 12, 2026Updated 7 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆72Sep 14, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Somatic structural variant caller for long-read data☆94Jun 30, 2026Updated 2 months ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆38Sep 3, 2026Updated 3 weeks ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Tools for working with genomic and high throughput sequencing data.☆372Aug 20, 2026Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆537Updated this week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago