hartwigmedical / hmftoolsLinks
Various algorithms for analysing genomics data
☆251Updated this week
Alternatives and similar repositories for hmftools
Users that are interested in hmftools are comparing it to the libraries listed below
Sorting:
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 5 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆251Updated last month
- ASCAT R package☆191Updated last month
- A structural variation pipeline for short-read sequencing☆195Updated this week
- Full-Length Alternative Isoform analysis of RNA☆240Updated this week
- Annotation and Ranking of Structural Variation☆267Updated last month
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆267Updated last week
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆199Updated 3 months ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆208Updated last month
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆158Updated 3 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆191Updated last year
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆180Updated last week
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆226Updated 4 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆244Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆284Updated last week
- Software program for checking sample matching for NGS data☆136Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- VarDict☆200Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- Detecting sites of genomic enrichment☆196Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆172Updated last week
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 2 years ago
- A tool for estimating repeat sizes☆198Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Structural variation and indel detection by local assembly☆249Updated 2 months ago