Modelling of Large Protein Complexes
☆39Aug 8, 2025Updated 8 months ago
Alternatives and similar repositories for MoLPC
Users that are interested in MoLPC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆181Oct 7, 2025Updated 6 months ago
- ☆14Nov 20, 2024Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated 2 years ago
- Protein 3D Structure Prediction with DeepFold☆19Aug 26, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- ☆80Feb 26, 2024Updated 2 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆172Dec 24, 2023Updated 2 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆21Jan 15, 2024Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated 9 months ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆18May 2, 2021Updated 4 years ago
- Set of useful HADDOCK utility scripts☆57Sep 19, 2025Updated 6 months ago
- Rotamer Interaction Field Python Libraries for Computational Protein Design☆14Feb 2, 2018Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Attempt at reproduction of AlphaFold2☆99Oct 23, 2024Updated last year
- An open-source platform for developing protein models beyond AlphaFold.☆415Jun 26, 2024Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- In silico directed evolution of peptide binders with AlphaFold☆265Jan 5, 2026Updated 3 months ago
- Fragment binding prediction with ColabFold☆43Nov 9, 2025Updated 5 months ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆173Sep 8, 2024Updated last year
- ☆305Updated this week
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins☆11Mar 11, 2024Updated 2 years ago
- Code to accompany "Practical Cheminformatics With Open Source Software"☆16Feb 24, 2022Updated 4 years ago
- ☆44Jan 10, 2024Updated 2 years ago
- Making Protein folding accessible to all!☆2,709Mar 17, 2026Updated 3 weeks ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated last year
- A simple yet versatile toolkit to setup quantum mechanical/molecular mechanical (QM/MM) calculations from molecular dynamics trajectories…☆30Jan 23, 2024Updated 2 years ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- Neurally-derived Potts models for protein design, inspired by dTERMen☆14Aug 23, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆388Sep 16, 2025Updated 6 months ago
- Benchmarking uncertainty quantification methods on proteins.☆21Jan 28, 2025Updated last year
- Temperature generator for Replica Exchange MD simulations☆29Dec 14, 2022Updated 3 years ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Oct 28, 2025Updated 5 months ago
- Rapid construction of chemical pipelines in interactive notebooks and cli usage☆13Sep 27, 2024Updated last year
- Calculate electron density from a solution scattering profile☆40Jan 28, 2026Updated 2 months ago
- ☆92Sep 25, 2024Updated last year