Alternatives and similar repositories for ciTLSs

Users that are interested in ciTLSs are comparing it to the libraries listed below

• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated 2 years ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• guangchunhan / LUAD_Code
  ☆25Updated 2 years ago
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 4 years ago
• YiLab-SC / scHolography
  ☆11Updated last year
• aliceygao / pan-Fibroblast
  ☆57Updated last year
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆30Updated last year
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆54Updated last year
• QiangShiPKU / CoVarNet
  ☆54Updated 6 months ago
• KnottLab / pembroRT-CancerCell2023
  Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.
  ☆13Updated 2 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 11 months ago
• wanglabtongji / SpaceScanner
  Scanner of specific spatial patterns in tissues
  ☆14Updated 3 years ago
• ma-jq / B
  ☆30Updated last year
• Chuxj / CRC-atlas
  ☆33Updated last year
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆53Updated 7 months ago
• azizilab / DIISCO_public
  Publically accessible code for DIISCO method
  ☆12Updated 3 months ago
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆58Updated last year
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆15Updated 6 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• wangjun-hub / CODEX_SCLC
  This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…
  ☆16Updated 8 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated last month
• Lan-lab / sc-GC
  ☆32Updated 3 years ago
• Coolgenome / PDAC
  ☆25Updated 11 months ago
• kaifuchenlab / MEBOCOST
  ☆33Updated 2 months ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆53Updated 4 years ago
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆19Updated last year
• Banovich-Lab / Spatial_PF
  ☆34Updated 3 months ago
• yqq-chen / CRC_ICB
  ☆34Updated 2 years ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆41Updated last year