Fast, efficient tool for analysis of T cell receptor repertoires (OLD VERSION)
☆11Jun 20, 2017Updated 9 years ago
Alternatives and similar repositories for Decombinator
Users that are interested in Decombinator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- eHive pipeline to build pairwise Oxford plots☆12Aug 11, 2019Updated 7 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- ☆15Jul 16, 2026Updated 3 months ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 9 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆55Jan 7, 2026Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Jul 21, 2026Updated 3 months ago
- Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)☆16Sep 23, 2016Updated 10 years ago
- pygor3 repository☆10Nov 20, 2025Updated 11 months ago
- An UMI-tagged sequencing swiss-knife. Built for amplicon sequencing of immune repertoires, ctDNA and rare mutations, single-cell sequenci…☆45Sep 24, 2026Updated last month
- Bayesian inference of effective contagion models from population level data, with STAN☆15Nov 9, 2020Updated 5 years ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 5 months ago
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers☆14Dec 16, 2025Updated 10 months ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆22Oct 18, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Summary statistics for repertoires☆18Feb 1, 2023Updated 3 years ago
- Optimized integer division for Java☆19Oct 13, 2020Updated 6 years ago
- External Merge Sort in Java☆20May 19, 2015Updated 11 years ago
- Python library for immune repertoire analysis☆17Aug 6, 2026Updated 2 months ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆24Sep 10, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for creating sequence logo plots☆22Feb 1, 2024Updated 2 years ago
- [DEPRECATED] MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22Aug 13, 2026Updated 2 months ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- Python interface to amino acid properties and IEDB☆58Updated this week
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Aug 13, 2017Updated 9 years ago
- Overlap assembler of paired-end DNA sequences generated by Illumina☆23Sep 2, 2016Updated 10 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- ☆10Oct 22, 2018Updated 8 years ago
- A package code for fitting power law distributions using Bayesian or Maximum Likelihood approaches.☆12Aug 1, 2019Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Load biophysicochemical properties of amino acids, Kidera factors and Atchley factors into R and Python in only a single line.☆17Nov 3, 2019Updated 6 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆66Updated this week
- DEPRECATED Lightweight bioinformatics pipeline tools using iPython☆14Dec 11, 2015Updated 10 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 6 years ago
- Predicting TCR:pMHC binding from structural data☆28Updated this week
- Playing around with the human genome and Clojure☆11Mar 15, 2022Updated 4 years ago