An AI Agent for Fully Automated Multi-omic Analyses
☆239Nov 4, 2024Updated last year
Alternatives and similar repositories for AutoBA
Users that are interested in AutoBA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆46Aug 21, 2024Updated 2 years ago
- ☆115Jul 14, 2026Updated 3 months ago
- A pipeline creation tool using Snakemake☆14Updated this week
- Benchmark for evaluating LLM agents in bioinformatics☆37Aug 11, 2026Updated 2 months ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 8 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 9 months ago
- Useful Utilities for Statistics and Visualization.☆33Jun 26, 2025Updated last year
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆58Jun 4, 2025Updated last year
- ☆226May 6, 2024Updated 2 years ago
- ☆37Sep 25, 2022Updated 4 years ago
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated last year
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆19Apr 24, 2020Updated 6 years ago
- ☆21Feb 15, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- An advanced multi-agent framework for automating complex bioinformatics workflows.☆28Jun 12, 2026Updated 4 months ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆11Sep 26, 2019Updated 7 years ago
- 🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.☆1,160Updated this week
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- AI-Driven Code Generation, Explanation and Execution for Data Analysis☆23Sep 11, 2024Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 10 months ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆113Oct 16, 2023Updated 2 years ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆255Aug 4, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆109Sep 26, 2026Updated 2 weeks ago
- Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star☆384Updated this week
- ☆61Oct 7, 2026Updated last week
- ☆23Dec 23, 2024Updated last year
- GWAS and rare variants tests at high speed using regenie☆16Jul 30, 2026Updated 2 months ago
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆58Sep 5, 2026Updated last month
- ☆45May 23, 2025Updated last year
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12May 26, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structure-based drug design based on Retrieval Augmented Generation☆29Nov 7, 2025Updated 11 months ago
- ☆60Jan 2, 2024Updated 2 years ago
- STELLA: Self-Evolving LLM Agent for Biomedical Research☆157Sep 15, 2026Updated 3 weeks ago
- ☆1,652Apr 29, 2026Updated 5 months ago
- ☆35Dec 22, 2024Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 6 months ago
- The code for gene set analysis by accessing domain databases☆120Dec 25, 2025Updated 9 months ago