Alternatives and similar repositories for AutoBA

Users that are interested in AutoBA are comparing it to the libraries listed below

• Winnie09 / GPTCelltype
  ☆222Updated last year
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆185Updated last month
• ai4nucleome / BioMaster
  ☆85Updated 3 months ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆291Updated 7 months ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆125Updated this week
• xCompass-AI / GeneCompass
  GeneCompass
  ☆109Updated 2 months ago
• MDhewei / Bioinforbricklayer
  Learning materials, files and codes for bioinformatics
  ☆189Updated 2 years ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆235Updated this week
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆223Updated 5 months ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆320Updated this week
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆163Updated 3 years ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆236Updated last month
• Genentech / SpatialAgent
  ☆136Updated 10 months ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆123Updated 4 months ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆314Updated last week
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆32Updated 3 years ago
• feifei9606 / Awesome-Bioinformatics-CN
  生物信息学软件，资源和工具库的精选列表
  ☆127Updated 3 years ago
• ncbi-nlp / GeneAgent
  The code for gene set analysis by accessing domain databases
  ☆97Updated last month
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆123Updated this week
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆127Updated 2 years ago
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆273Updated last year
• ArcInstitute / SRAgent
  LLM agents for working with the SRA and associated bioinformatics databases.
  ☆149Updated 2 months ago
• antigenomics / vdjdb-db
  🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!
  ☆150Updated this week
• raphaelmourad / LLM-for-genomics-training
  Tutorial on large language models for genomics
  ☆267Updated 8 months ago
• Genentech / BRAID
  BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
  ☆219Updated 5 months ago
• jkobject / geneformer
  ☆92Updated 5 months ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆338Updated 2 weeks ago
• pinellolab / CRISPResso2
  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
  ☆331Updated this week
• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆250Updated 3 weeks ago
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆288Updated 11 months ago