Alternatives and similar repositories for AutoBA

Users that are interested in AutoBA are comparing it to the libraries listed below

• Winnie09 / GPTCelltype
  ☆213Updated last year
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆124Updated last month
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆286Updated 4 months ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆202Updated 2 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆96Updated 3 weeks ago
• ai4nucleome / BioMaster
  ☆72Updated this week
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆220Updated 2 weeks ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆120Updated last month
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆87Updated 3 years ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆30Updated 3 years ago
• Genentech / SpatialAgent
  ☆130Updated 7 months ago
• feifei9606 / Awesome-Bioinformatics-CN
  生物信息学软件，资源和工具库的精选列表
  ☆123Updated 3 years ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆233Updated last month
• MDhewei / Bioinforbricklayer
  Learning materials, files and codes for bioinformatics
  ☆186Updated 2 years ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆303Updated this week
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆295Updated last week
• Genentech / BRAID
  BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
  ☆215Updated 2 months ago
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆275Updated 8 months ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆74Updated 8 months ago
• idekerlab / DrugCell
  A visible neural network model for drug response prediction
  ☆148Updated 2 years ago
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆104Updated 2 months ago
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆267Updated 11 months ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆156Updated 3 years ago
• lingxusb / Riboformer
  ☆23Updated 5 months ago
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆145Updated 2 weeks ago
• CompEpigen / methylbert
  A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
  ☆38Updated 7 months ago
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆126Updated 2 years ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆93Updated 2 months ago
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆86Updated 4 years ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆220Updated 4 months ago