Alternatives and similar repositories for awesome-bioagent-papers

Users that are interested in awesome-bioagent-papers are comparing it to the libraries listed below

• QuKunLab / MultiomeBenchmarking
  ☆44Updated 2 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆92Updated last month
• BGIResearch / BioLLM
  ☆21Updated 3 weeks ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆57Updated 11 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆84Updated last year
• jsxlei / scCLIP
  ☆28Updated last year
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆43Updated 8 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆58Updated 4 months ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆59Updated 10 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆61Updated 2 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆69Updated 4 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆77Updated 9 months ago
• Genentech / SpatialAgent
  ☆96Updated last month
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆53Updated 9 months ago
• jkobject / geneformer
  ☆65Updated last year
• czi-ai / scGenePT
  ☆16Updated 3 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆64Updated 11 months ago
• microsoft / zero-shot-scfoundation
  ☆62Updated 8 months ago
• TencentAILabHealthcare / scPROTEIN
  ☆50Updated 5 months ago
• Genentech / PerturbQA
  ☆13Updated 2 months ago
• bowang-lab / genomic-FM
  ☆24Updated 2 weeks ago
• theislab / scTab
  ☆58Updated 8 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆141Updated last year
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆41Updated last month
• Noble-Lab / HiCFoundation
  HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.
  ☆16Updated this week
• suinleelab / contrastiveVI
  ☆55Updated last year
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆34Updated this week
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆43Updated 2 weeks ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆25Updated last month
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆71Updated last month