Alternatives and similar repositories for awesome-bioagent-papers

Users that are interested in awesome-bioagent-papers are comparing it to the libraries listed below

• Genentech / SpatialAgent
  ☆127Updated 6 months ago
• vandijklab / cell2sentence
  Cell2Sentence: Teaching Large Language Models the Language of Biology
  ☆199Updated 3 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆89Updated 3 months ago
• zou-group / CellVoyager
  ☆91Updated 3 weeks ago
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆60Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆97Updated last year
• jkobject / geneformer
  ☆79Updated last month
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆74Updated 7 months ago
• Genentech / PerturbQA
  ☆23Updated 2 weeks ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆88Updated 7 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆62Updated 9 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆96Updated 6 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆108Updated this week
• BGIResearch / BioLLM
  ☆27Updated 5 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆73Updated 7 months ago
• snap-stanford / BioDiscoveryAgent
  BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments
  ☆90Updated 3 months ago
• czi-ai / scGenePT
  ☆24Updated 8 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆89Updated last week
• snap-stanford / SATURN
  ☆139Updated last year
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆56Updated 4 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated last month
• TencentAILabHealthcare / scPROTEIN
  ☆54Updated 10 months ago
• bowang-lab / scGPT-spatial
  ☆110Updated 7 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆145Updated last year
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆87Updated last week
• ncbi-nlp / GeneAgent
  The code for gene set analysis by accessing domain databases
  ☆77Updated last week
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆26Updated 2 months ago
• TencentAILabHealthcare / DNAGPT
  ☆44Updated 2 years ago