Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.
☆86Feb 10, 2026Updated 3 weeks ago
Alternatives and similar repositories for awesome-bioagent-papers
Users that are interested in awesome-bioagent-papers are comparing it to the libraries listed below
Sorting:
- federated learning with tabular learning☆26Mar 4, 2025Updated last year
- Web application demonstrating 3D modeling of spatial transcriptomics☆23Dec 9, 2024Updated last year
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆42Aug 21, 2024Updated last year
- ☆88Nov 4, 2025Updated 4 months ago
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.☆17Jan 3, 2024Updated 2 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- Material parsers and other tools, scripts Initially developed for Grobid Superconductor☆13Feb 21, 2025Updated last year
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 2 years ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆32Jul 9, 2025Updated 8 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 6 months ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆10Sep 26, 2019Updated 6 years ago
- DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.☆12May 4, 2022Updated 3 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Jan 21, 2021Updated 5 years ago
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago
- Legend made easy for matplotlib☆34Jun 7, 2025Updated 9 months ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- ☆26Sep 9, 2025Updated 6 months ago
- Gain biological insights using LLM.☆16Jan 26, 2026Updated last month
- ☆31Feb 6, 2026Updated last month
- ☆15Sep 26, 2019Updated 6 years ago
- An AI Agent for Fully Automated Multi-omic Analyses☆222Nov 4, 2024Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)☆19May 27, 2024Updated last year
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated 11 months ago
- A set of files to do genomics analysis on python☆18Jun 5, 2025Updated 9 months ago
- ☆20Nov 12, 2024Updated last year
- ☆22Apr 27, 2023Updated 2 years ago
- ☆21Jan 1, 2022Updated 4 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆87Feb 28, 2026Updated last week
- A toolkit of spatial transcriptomic analysis.☆274Feb 12, 2026Updated 3 weeks ago
- ☆24Aug 20, 2024Updated last year
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆58Sep 17, 2024Updated last year
- ☆105Sep 16, 2025Updated 5 months ago
- Superconductors material dataset☆26Dec 5, 2023Updated 2 years ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Mar 28, 2024Updated last year
- Benchmark for LLM-based Agents in Computational Biology☆77Oct 6, 2025Updated 5 months ago
- ☆27May 14, 2025Updated 9 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Nov 6, 2025Updated 4 months ago