Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.
☆109Feb 10, 2026Updated 6 months ago
Alternatives and similar repositories for awesome-bioagent-papers
Users that are interested in awesome-bioagent-papers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆58Apr 20, 2025Updated last year
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆125Jul 6, 2025Updated last year
- A harness for spatial biology☆207May 4, 2026Updated 4 months ago
- The code for gene set analysis by accessing domain databases☆120Dec 25, 2025Updated 8 months ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆112Jul 14, 2026Updated last month
- LLM agents for working with the SRA and associated bioinformatics databases.☆181Jul 24, 2026Updated last month
- Single cell foundation model with federated tabular learning☆38Aug 10, 2026Updated 3 weeks ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆36Jul 24, 2026Updated last month
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated last year
- ☆22Apr 27, 2023Updated 3 years ago
- One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English anal…☆63Aug 28, 2026Updated last week
- ☆49Dec 31, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A general, evolvable, and distributed agent framework & harness for data science.☆482Updated this week
- Awesome-AI-Meets-Biology is a collection of state-of-the-art, novel, exciting LLMs and agents on biomedical and bioinformatic fields.☆39Aug 31, 2026Updated last week
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆45Aug 21, 2024Updated 2 years ago
- ☆563Aug 30, 2026Updated last week
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆155Aug 26, 2026Updated last week
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆15May 3, 2023Updated 3 years ago
- MCP server for single cell analysis☆12May 15, 2025Updated last year
- Comprehensive suite for evaluating perturbation prediction models☆156Jul 27, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated last month
- CompBioAgent: An LLM-powered agent for single-cell RNA-seq data exploration. https://doi.org/10.1101/2025.03.17.643771☆16Apr 25, 2025Updated last year
- Scripts for analysis of genome-wide perturb-seq in primary human T cells☆24Aug 28, 2026Updated last week
- Gain biological insights using LLM.☆14Jan 26, 2026Updated 7 months ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 6 months ago
- Biomni: a general-purpose biomedical AI agent☆3,853Aug 31, 2026Updated last week
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆38Mar 1, 2026Updated 6 months ago
- Benchmark for LLM-based Agents in Computational Biology☆142Oct 6, 2025Updated 11 months ago
- An AI Agent for Fully Automated Multi-omic Analyses☆236Nov 4, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- STELLA: Self-Evolving LLM Agent for Biomedical Research☆152Aug 7, 2026Updated last month
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆11Aug 28, 2026Updated last week
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 6 months ago
- The binning tool with dynamic contrastive learning and deep language model☆25Aug 14, 2026Updated 3 weeks ago
- ☆342Aug 16, 2026Updated 3 weeks ago
- This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Li…☆17May 23, 2025Updated last year