stephenturner / biorecapView external linksLinks
Retrieve and summarize bioRxiv preprints with a local LLM using ollama
☆72Sep 27, 2024Updated last year
Alternatives and similar repositories for biorecap
Users that are interested in biorecap are comparing it to the libraries listed below
Sorting:
- A quick reference for how to run many models in R.☆13May 19, 2018Updated 7 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Oct 25, 2024Updated last year
- Practical R Packaging with Docker☆38Sep 19, 2025Updated 4 months ago
- A DRAFT, early stage book on snakemake.☆22Nov 1, 2023Updated 2 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated last year
- Project Name Here☆12Jan 25, 2022Updated 4 years ago
- Multithreaded read analysis☆23Dec 18, 2025Updated last month
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Jan 4, 2021Updated 5 years ago
- E2E (Easy to Ensemble) is a novel R package designed to provide a comprehensive and flexible framework for ensemble machine learning, spe…☆22Dec 4, 2025Updated 2 months ago
- Create map inset☆21Mar 20, 2025Updated 10 months ago
- Ressources for Boinformatics Trainings☆12Nov 20, 2023Updated 2 years ago
- Template for building your own portfolio☆27Jul 2, 2025Updated 7 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Feb 4, 2026Updated last week
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated 11 months ago
- This package allows R code chunks, which can be tested for reproducibility.☆37Sep 10, 2025Updated 5 months ago
- R package to easily construct prompts and associated logic for interacting with large language models (‘LLMs’)☆30Nov 30, 2025Updated 2 months ago
- Code for LazyAF pipeline☆23Feb 12, 2024Updated 2 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 3 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated 10 months ago
- ☆11Oct 11, 2024Updated last year
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- Use batch balanced KNN (BBKNN) in R☆13Sep 9, 2025Updated 5 months ago
- This package is archived and further developed under the name RFSurrogates. In this R-package functions are provided to select important …☆11Jul 27, 2023Updated 2 years ago
- automatic generate the Curriculum Vitae☆19Feb 8, 2026Updated last week
- Create academic R markdown projects for open science and reproducible research☆25Jun 28, 2020Updated 5 years ago
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 3 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- An R package for caching function outputs in memory (memoization)☆13Dec 9, 2025Updated 2 months ago
- My Bash notes☆12Feb 7, 2026Updated last week
- Tree interpretation methods based on ranger☆13Jan 30, 2026Updated 2 weeks ago
- A pipeline creation tool using Snakemake☆12Updated this week
- Ergonomic tooling to assess models of spatial data☆39Apr 16, 2025Updated 10 months ago
- An R package to calculate Dynamical Network Biomarkers (DNB).☆10Sep 16, 2022Updated 3 years ago
- My blog.☆16Aug 8, 2025Updated 6 months ago
- A high-performance R for supervised and unsupervised machine learning evaluation metrics witten in 'C++'.☆27Jun 21, 2025Updated 7 months ago
- fastest GTF/GFF-to-BED converter chilling around☆31Jan 20, 2026Updated 3 weeks ago
- Watch the File System for Changes☆34Jan 22, 2026Updated 3 weeks ago
- R library to run Ollama language models☆120Jul 21, 2025Updated 6 months ago
- AI screening tools in R for systematic reviewing☆14Feb 4, 2026Updated last week