Alternatives and similar repositories for LLM-BioDataExtractor

Users that are interested in LLM-BioDataExtractor are comparing it to the libraries listed below

• wukevin / proteinclip
  Contrastive learning harmonizing protein language models and natural language models
  ☆38Updated last year
• AspirinCode / awesome-BioMolGenFold
  RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
  ☆38Updated 4 months ago
• aartikrish / de-novo-antibiotics
  This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025
  ☆32Updated 5 months ago
• HUBioDataLab / SELFormer
  SELFormer: Molecular Representation Learning via SELFIES Language Models
  ☆103Updated 11 months ago
• mahdip72 / prot2token
  This is the official repository of Prot2Token paper.
  ☆38Updated 5 months ago
• WeiLab-Biology / DeepProSite
  ☆34Updated last year
• lamm-mit / ProteinDiffusionGenerator
  Generative method to design novel proteins using a diffusion model
  ☆43Updated 2 years ago
• piercelab / tcrmodel2
  ☆45Updated 7 months ago
• astrazeneca-cgr-publications / DrugnomeAI-release
  ☆18Updated last year
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆33Updated last year
• idrugLab / ADCNet
  ☆23Updated 6 months ago
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆42Updated 10 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆99Updated 3 months ago
• rxn4chemistry / biocatalysis-model
  RXN for biochemical reactions
  ☆71Updated 3 years ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆41Updated 4 years ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆87Updated 6 months ago
• EDAPINENUT / GeoAB
  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
  ☆42Updated last year
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• CSUBioGroup / DTIAM
  A unified framework for predicting drug-target interactions, binding affinities and activation/inhibition mechanisms.
  ☆51Updated 3 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆88Updated 5 months ago
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆68Updated this week
• Ced3-han / PepHAR
  [ICLR 2025] Hotspot-Driven Peptide Design via Multi-Fragment Autoregressive Extension
  ☆13Updated 6 months ago
• OmicsML / awesome-molecule-protein-pretrain-papers
  ☆46Updated last year
• gersteinlab / GenAI4Drug
  [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design
  ☆89Updated 11 months ago
• mnielLab / AbEpiTope-1.0
  AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…
  ☆25Updated last month
• jswitten / LNP_ML
  ☆22Updated last year
• wzn99 / DrugPilot
  A LLM agent framework for drug discovery
  ☆19Updated 3 months ago
• prokia / BioNavi-NP
  Biosynthesis Navigator for Natural Products
  ☆52Updated 3 years ago
• csi-greifflab / developability_profiling
  ☆26Updated 2 months ago