This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Literature'
☆16May 23, 2025Updated 9 months ago
Alternatives and similar repositories for LLM-BioDataExtractor
Users that are interested in LLM-BioDataExtractor are comparing it to the libraries listed below
Sorting:
- Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence spac…☆18Mar 6, 2026Updated 2 weeks ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆10Nov 24, 2023Updated 2 years ago
- ☆37Mar 21, 2021Updated 5 years ago
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆18Dec 24, 2024Updated last year
- Deep learning tools for peptide substrate prediction and generation☆41Nov 20, 2025Updated 4 months ago
- DataHack Challenges - Challenges offered during our hackathon by top data companies.☆12Jan 28, 2020Updated 6 years ago
- A CUDA-based multi-GPU vertex-centric graph processing framework based on Warp Segmentation and Vertex Refinement techniques.☆12Mar 20, 2017Updated 9 years ago
- Optical Prediction Neural Network -- Emulating Optical Simulations with a Neural Network☆13Jan 18, 2023Updated 3 years ago
- fast randomized PCA for sparse data☆14Mar 14, 2023Updated 3 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- ☆10Jun 24, 2023Updated 2 years ago
- Deep hybrid models: bridging discriminative and generative approaches https://cs.stanford.edu/~ermon/papers/uai2017_cr.pdf☆17Dec 3, 2017Updated 8 years ago
- CNCA: Toward Customizable and Natural Generation of Adversarial Camouflage for Vehicle Detectors☆15Nov 3, 2024Updated last year
- ☆16May 31, 2024Updated last year
- Sparse Matrix-Matrix Multiplication Benchmark on Intel Xeon and Xeon Phi (KNC, KNL) from blog post:☆12Sep 25, 2016Updated 9 years ago
- ☆17Jun 15, 2022Updated 3 years ago
- ☆18Dec 2, 2025Updated 3 months ago
- Lennard-Jones Molecular Dynamics for beginners☆15Sep 20, 2021Updated 4 years ago
- ☆91Feb 14, 2024Updated 2 years ago
- Python library & CLI to create, view and edit PFB files☆12Feb 19, 2026Updated last month
- AutoML 2024: HPOD: Hyperparameter Optimization for Unsupervised Outlier Detection☆13Jul 12, 2024Updated last year
- Python implementation of the 15 puzzle game☆10Dec 30, 2016Updated 9 years ago
- ChemDataExtractor 2.1 that has been modified for extracting properties of molecular thermally-activated delayed fluorescent (TADF) materi…☆13May 23, 2025Updated 9 months ago
- Unsupervised fingerprinting of disordered solids leading to analogical materials discovery.☆10Feb 14, 2023Updated 3 years ago
- ☆11Nov 12, 2025Updated 4 months ago
- DNA Microarray Gene Expression Data Classification Using SVM and MLP with Feature Selection Methods Relief and LASSO☆29Jun 25, 2019Updated 6 years ago
- ☆20Aug 14, 2025Updated 7 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Jul 24, 2024Updated last year
- Deep learning based prediction of temperature dependent enzyme turnover rates☆17Nov 24, 2024Updated last year
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12May 26, 2025Updated 9 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- Optimize classical force field parameters against reference data☆10Mar 13, 2026Updated last week
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated 9 months ago
- 🤯 Thoughts Lab 是基于 uni-app 开发的『工具集小程序』，采用通用型分层架构，支持多端发布、跨框架迁移 🤞☆16Dec 13, 2022Updated 3 years ago
- This repository contains the positive-unlabeled learning-based enzyme promiscuity prediction model as described in the paper Deep learnin…☆16Feb 16, 2025Updated last year