JackKuo666 / LLM-BioDataExtractorLinks
This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Literature'
☆14Updated 6 months ago
Alternatives and similar repositories for LLM-BioDataExtractor
Users that are interested in LLM-BioDataExtractor are comparing it to the libraries listed below
Sorting:
- This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025☆33Updated 6 months ago
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆38Updated 3 weeks ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆38Updated 5 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- ☆34Updated last year
- AlphaDrug: Protein Target Specific De Novo Molecular Generation☆40Updated 3 years ago
- ☆39Updated 6 months ago
- A LLM-based Agent Framework for Drug Discovery☆19Updated 4 months ago
- Code for peptide ligand design with machine learning models.☆28Updated last year
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆28Updated 3 years ago
- Biosynthesis Navigator for Natural Products☆52Updated 3 years ago
- ☆46Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆34Updated last year
- Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)☆35Updated 5 months ago
- [IJMS 2022] DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer☆12Updated 3 years ago
- ☆45Updated 8 months ago
- PocketDTA☆37Updated 2 weeks ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆66Updated 3 months ago
- Scalable Protein Language Model Finetuning with Distributed Learning and Advanced Training Techniques such as LoRA.☆31Updated last year
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- ☆20Updated 4 years ago
- Contrastive learning harmonizing protein language models and natural language models☆38Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…☆25Updated 2 months ago
- Collection of papers for Molecular Representation using AI☆29Updated 3 weeks ago
- Identifying peptide-receptor interactions using AlphaFold-Multimer☆27Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆89Updated 6 months ago
- Generative method to design novel proteins using a diffusion model☆43Updated 2 years ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆44Updated last month
- The first large protein language model trained follows structure instructions.☆87Updated 6 months ago