Useful Utilities for Statistics and Visualization.
☆31Jun 26, 2025Updated 9 months ago
Alternatives and similar repositories for pcutils
Users that are interested in pcutils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated last week
- Network analysis for multi-omics☆107Feb 9, 2026Updated 2 months ago
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆87Feb 21, 2026Updated last month
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- A set of processes/pipelines for bioinformatics☆14Updated this week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated 10 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20May 9, 2019Updated 6 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated 2 months ago
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆82Dec 16, 2023Updated 2 years ago
- Methods to discover gene programs on single-cell data☆180Apr 1, 2026Updated 2 weeks ago
- Gain biological insights using LLM.☆16Jan 26, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆284Apr 9, 2026Updated last week
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- plotthis is an R package that is built upon ggplot2 and other plotting packages.☆85Updated this week
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Mar 25, 2026Updated 3 weeks ago
- GenAI harnesses the power of advanced models like GPT-4 and Gemini Pro to serve as versatile coding and writing assistants for users in b…☆10Sep 22, 2025Updated 6 months ago
- Execute command line tool from R☆20Mar 17, 2026Updated 3 weeks ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 10 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Dec 6, 2021Updated 4 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 7 years ago
- R Package as interface to rsync☆20Oct 20, 2025Updated 5 months ago
- ☆19Feb 23, 2022Updated 4 years ago
- ☆15Jul 25, 2025Updated 8 months ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- 上科大刘雪松课题组基因组学分析传承与分享知识库☆14Feb 21, 2020Updated 6 years ago
- ☆32Dec 6, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- ☆20Dec 4, 2025Updated 4 months ago
- ☆23Updated this week
- Quantifying metabolism activity at the single-cell resolution☆167Feb 18, 2026Updated last month
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆304Updated this week
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- ☆21Sep 4, 2024Updated last year