mgharvey / seqcap_popLinks
A pipeline for de novo assembly of population-level sequence capture datasets.
☆12Updated 6 years ago
Alternatives and similar repositories for seqcap_pop
Users that are interested in seqcap_pop are comparing it to the libraries listed below
Sorting:
- Recovering genes from targeted sequence capture data☆128Updated 4 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆132Updated 11 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆179Updated 10 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆147Updated last week
- SMC++ infers population history from whole-genome sequence data.☆167Updated last year
- Version 5 of the CAFE phylogenetics software☆148Updated 8 months ago
- Scripts for analysis used during the course☆92Updated last year
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 4 years ago
- Reference-free profiling of polyploid genomes☆129Updated last month
- Foreign Contamination Screening caller scripts and documentation☆147Updated 7 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆158Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- Get assembly statistics from FASTA and FASTQ files☆123Updated 2 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆23Updated 2 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 2 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆49Updated last month
- ☆218Updated 9 months ago
- RADseq workflow using STACKS☆59Updated 2 weeks ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- ☆29Updated 2 months ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆104Updated 8 months ago
- A library for running k-mers based GWAS☆118Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- Synteny Imager☆65Updated this week
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆106Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- EasyCodeML: A visual tool for analysis of selection using CodeML☆83Updated 2 years ago
- Calculate summary statistics and manipulate multiple sequence alignments☆87Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago