Alternatives and similar repositories for seqcap_pop

Users that are interested in seqcap_pop are comparing it to the libraries listed below

• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆131Updated last month
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆93Updated last year
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆135Updated last year
• MetazoaPhylogenomicsLab / FANTASIA
  ☆34Updated 5 months ago
• Saskia-Oosterbroek / decona
  fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
  ☆50Updated 4 months ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute
  ☆66Updated 2 weeks ago
• BioEasy / EasyCodeML
  EasyCodeML: A visual tool for analysis of selection using CodeML
  ☆83Updated 2 years ago
• nylander / catfasta2phyml
  Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
  ☆76Updated last year
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆183Updated last year
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆61Updated last week
• BGAcademy23 / smudgeplot
  Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
  ☆11Updated 2 years ago
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆172Updated 2 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆84Updated 4 years ago
• BenoitMorel / GeneRax
  ☆77Updated 8 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆72Updated 2 years ago
• marekborowiec / AMAS
  Calculate summary statistics and manipulate multiple sequence alignments
  ☆91Updated last week
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆24Updated 2 years ago
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆153Updated 3 months ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆93Updated 2 weeks ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆48Updated last year
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆84Updated last year
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆120Updated 2 years ago
• ColonnaLab / EMBO_popgen
  ☆17Updated 7 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆159Updated 11 months ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆82Updated 4 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆141Updated 4 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆112Updated 5 months ago
• nt246 / lcwgs-guide-tutorial
  ☆103Updated 4 years ago