AlphaGenes / AlphaImpute2
AlphaImpute2: pedigree- and population-based genotype imputation
☆11Updated 2 weeks ago
Alternatives and similar repositories for AlphaImpute2
Users that are interested in AlphaImpute2 are comparing it to the libraries listed below
Sorting:
- R package for pedigree inference based on SNP data☆26Updated 10 months ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆58Updated last week
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆35Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 6 months ago
- ☆43Updated last month
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last week
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Data files useful for BLUPF90 programs☆18Updated 4 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- feature-based deep learning for the identification of selective sweeps☆55Updated 2 weeks ago
- Repository for speciation genomics website☆25Updated 9 months ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 6 months ago
- Genome Annotation Without Nightmares☆44Updated 3 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- Presentations from the course☆36Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- A pipeline that accepts a VCF file to run through Admixture☆60Updated 4 months ago
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated last week
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated last month
- Tutorials for bioinformatics and data analysis related to landscape genomics☆28Updated 6 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- Tools for inference of the DFE with dadi☆14Updated 4 years ago