Alternatives and similar repositories for AlphaImpute2

Users that are interested in AlphaImpute2 are comparing it to the libraries listed below

• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆28Updated 2 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 9 months ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆107Updated 2 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• masuday / data
  Data files useful for BLUPF90 programs
  ☆19Updated 4 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆85Updated last year
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆66Updated 2 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆46Updated 9 months ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 2 weeks ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆68Updated 5 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated 2 months ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆64Updated last month
• szpiech / selscan
  Haplotype based scans for selection
  ☆134Updated last week
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆39Updated 8 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• Yale-EEB723 / syllabus
  ☆22Updated 6 years ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• MarcooLopez / Genomic-Selection
  ☆26Updated 4 years ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆41Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated 9 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆28Updated 6 years ago
• halasadi / MAPS
  software for the MAPS method
  ☆24Updated 6 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆67Updated last week
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 7 years ago
• gbradburd / SpaceMix
  ☆30Updated 3 years ago