AlphaGenes / AlphaImpute2

Related projects ⓘ

Alternatives and complementary repositories for AlphaImpute2

• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆26Updated 5 months ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆30Updated 7 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆53Updated 2 weeks ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆39Updated 5 years ago
• ANGSD / NgsRelate
  ☆42Updated 11 months ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆30Updated 7 months ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆32Updated 11 months ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆43Updated 3 months ago
• hemstrow / snpR
  ☆28Updated 2 weeks ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆22Updated 2 years ago
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆26Updated last month
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 3 months ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆13Updated 4 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated last year
• enormandeau / mapcomp
  Genetic Map Comparison
  ☆20Updated 2 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆35Updated 10 months ago
• nicolazzie / SNPchimpRepo
  Helpful handful of programs, completely open-source and free
  ☆11Updated 3 years ago
• standard-aaron / palm
  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
  ☆16Updated 4 years ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆18Updated 3 years ago
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆50Updated 2 months ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆59Updated last year
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆43Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆26Updated 3 years ago
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆26Updated 8 months ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆32Updated 3 years ago