AlphaGenes / AlphaImpute2Links
AlphaImpute2: pedigree- and population-based genotype imputation
☆11Updated 4 months ago
Alternatives and similar repositories for AlphaImpute2
Users that are interested in AlphaImpute2 are comparing it to the libraries listed below
Sorting:
- Haplotype based scans for selection☆131Updated last week
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Estimating Effective Migration Surfaces☆105Updated last year
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆35Updated last year
- R package for pedigree inference based on SNP data☆27Updated 2 weeks ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- ☆25Updated 4 years ago
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Data files useful for BLUPF90 programs☆19Updated 4 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 9 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last month
- a bash pipeline for RAD sequencing☆55Updated 7 months ago
- Repository for speciation genomics website☆26Updated this week
- R functions related to pedigrees☆14Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 3 weeks ago
- Estimate recombination rates from population genetic data☆68Updated 5 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 8 months ago
- Shiny apps for teaching Population Genetics☆65Updated 2 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated 4 months ago
- A package for population structure inference from RAD-seq data☆33Updated 4 years ago
- Manipulate FASTA files☆30Updated 11 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆88Updated 2 years ago
- simple examples of using supervised machine learning for population genetics inference☆38Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago