AlphaImpute2: pedigree- and population-based genotype imputation
☆12Apr 1, 2026Updated 3 weeks ago
Alternatives and similar repositories for AlphaImpute2
Users that are interested in AlphaImpute2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- ☆10Feb 18, 2018Updated 8 years ago
- R package for pedigree inference based on SNP data☆28Jan 4, 2026Updated 3 months ago
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆13Feb 26, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GS3, software for genomic prediction and whole genome Bayesian analysis☆10Dec 18, 2017Updated 8 years ago
- ☆17Oct 18, 2024Updated last year
- MultiSuSiE is a multi-ancestry extension of the Sum of Single Effects model☆16Feb 15, 2026Updated 2 months ago
- ☆11Nov 17, 2020Updated 5 years ago
- Statistical GENetics Input/Output Functions☆18Feb 20, 2025Updated last year
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Oct 28, 2025Updated 6 months ago
- TELOmere SEARCH in Long sequencing Reads☆13Dec 26, 2025Updated 4 months ago
- Use shinyproxy to achieve Rstudio Server Pro feature parity☆17Mar 28, 2019Updated 7 years ago
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Downsample fastq files in an automated way☆12May 7, 2020Updated 5 years ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated last year
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- A pipeline for de novo assembly of population-level sequence capture datasets.☆12Nov 6, 2018Updated 7 years ago
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Jul 6, 2022Updated 3 years ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆18Jan 29, 2026Updated 3 months ago
- An R package to compute relationship matrices for diploid and autotetraploid species☆24Dec 12, 2025Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Automatically exported from code.google.com/p/macs☆17Oct 17, 2019Updated 6 years ago
- UCE Bioinformatics Pipeline☆17Sep 29, 2025Updated 7 months ago
- efficient sampling for close-kin mark recapture power estimation☆15Jun 26, 2025Updated 10 months ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- Tools for working with pedigrees in R☆28Apr 18, 2026Updated last week
- 'pkill -f' with a confirmation prompt.☆14Mar 26, 2020Updated 6 years ago
- ☆18Dec 15, 2021Updated 4 years ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated 2 months ago
- DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.☆56Dec 3, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Transfer coordinates across genomes☆23Updated this week
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆66Feb 11, 2026Updated 2 months ago
- circos pipeline☆20May 8, 2021Updated 4 years ago
- microhaplotype visualizer and analyzer☆20Jun 24, 2021Updated 4 years ago
- ☆27Aug 20, 2020Updated 5 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- ☆29Oct 14, 2025Updated 6 months ago