Plant breeding simulations with AlphaSimR
☆33Jan 5, 2025Updated last year
Alternatives and similar repositories for jbancic_alphasimr_plants
Users that are interested in jbancic_alphasimr_plants are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to run stochastic simulations of breeding scheme genetics☆10Nov 20, 2025Updated 10 months ago
- ☆15Sep 15, 2026Updated last week
- R package for breeding program simulations☆73Updated this week
- ☆14Sep 11, 2026Updated last week
- ☆15Oct 15, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- lme4 for Genomic Selection☆18Jan 26, 2026Updated 7 months ago
- A deeplearning driving bioinformatic toolkit.☆25Jul 14, 2025Updated last year
- ☆11Aug 20, 2019Updated 7 years ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆13Apr 2, 2018Updated 8 years ago
- FielDHub is an R Shiny design of experiments (DOE) app that aids in the creation of traditional, unreplicated, augmented and partially re…☆59Aug 30, 2026Updated 3 weeks ago
- ☆60Updated this week
- Practical Haplotype Graph (PHG) version 2☆36Updated this week
- Heritability in plant breeding - R and SAS code examples☆41Aug 12, 2026Updated last month
- contains R scripts exemplifying use of multivariate mixed models in a variety of R packages.☆15Nov 8, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resourc…☆21Updated this week
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆18Sep 27, 2017Updated 8 years ago
- simulate sequence data and complicated pedigree structures☆16Apr 5, 2023Updated 3 years ago
- A python tool to evaluate genomic prediction in complex scenarios☆37Oct 18, 2022Updated 3 years ago
- ☆29Jun 14, 2025Updated last year
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- Modular Breeding Program Simulator☆46Feb 19, 2026Updated 7 months ago
- Automated Machine Learning for Environmental Data-Driven Genome Prediction☆17Sep 12, 2025Updated last year
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆27Dec 15, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 10 months ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆69Jul 29, 2026Updated last month
- two-stage analysis of multi-environment trials for genomic selection and GWAS☆32Aug 29, 2026Updated 3 weeks ago
- Genome Association Predict Integrate Tools☆241Updated this week
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- Bayesian No-Effect-Concentration estimation in R☆15Updated this week
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict ma…☆18Jan 15, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- circos pipeline☆20May 8, 2021Updated 5 years ago
- R package for pedigree inference based on SNP data☆29Jan 4, 2026Updated 8 months ago
- R package for fitting high-dimensional multivariate linear mixed effect models☆40Updated this week
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆18Sep 5, 2024Updated 2 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- TrGP aims to get knowledge from the source task's learning system to improve the target genomic prediction (GP) task.☆14Dec 12, 2023Updated 2 years ago
- ☆27Mar 6, 2026Updated 6 months ago